hchen725 (Han Chen) – Community Activity

New activity in ctheodoris/Geneformer 9 days ago

Update geneformer/tokenizer.py

#415 opened 9 days ago by

hchen725

New activity in ctheodoris/Geneformer 29 days ago

Remove circular import from .data

1

#381 opened 29 days ago by

hchen725

New activity in ctheodoris/Geneformer about 1 month ago

Add function for summing of Ensembl IDs

#377 opened about 1 month ago by

hchen725

New activity in ctheodoris/Geneformer 2 months ago

Add function to get number of model embeddings

#364 opened 2 months ago by

hchen725

embs_df with all model embeddings

#363 opened 2 months ago by

hchen725

New activity in ctheodoris/Geneformer 3 months ago

Update geneformer/perturber_utils.py

1

#362 opened 3 months ago by

hchen725

Update geneformer/perturber_utils.py

#361 opened 3 months ago by

hchen725

Update geneformer/emb_extractor.py

1

#356 opened 3 months ago by

hchen725

Update geneformer/in_silico_perturber.py

1

#355 opened 3 months ago by

hchen725

Update geneformer/perturber_utils.py

#353 opened 3 months ago by

hchen725

Update geneformer/perturber_utils.py

1

#354 opened 3 months ago by

hchen725

Update geneformer/emb_extractor.py

#352 opened 3 months ago by

hchen725

Update geneformer/emb_extractor.py

#350 opened 3 months ago by

hchen725

New activity in ctheodoris/Geneformer 6 months ago

Update for gene classification

#330 opened 6 months ago by

hchen725

Add input for custom gene token dictionary and add str to valid options

#327 opened 6 months ago by

hchen725

Update with gene classifier, custom token dict, and str validate options

#329 opened 6 months ago by

hchen725

change gene token dict path to token dictionary file to match tokenizer

#328 opened 6 months ago by

hchen725

New activity in ctheodoris/Geneformer 7 months ago

Get the gene keys and gene list keys from the token dictionary instead of medians

#304 opened 7 months ago by

hchen725

Update geneformer/emb_extractor.py

#303 opened 7 months ago by

hchen725

Add emb_mode required argument into load_model

#302 opened 7 months ago by

hchen725

Fix typo

#301 opened 7 months ago by

hchen725

Add option for variable input_size and to add CLS/SEP Tokens

#299 opened 7 months ago by

hchen725

Han Chen

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hchen725's activity

Update geneformer/tokenizer.py

Remove circular import from .data

Add function for summing of Ensembl IDs

Add function to get number of model embeddings

embs_df with all model embeddings

Update geneformer/perturber_utils.py

Update geneformer/perturber_utils.py

Update geneformer/emb_extractor.py

Update geneformer/in_silico_perturber.py

Update geneformer/perturber_utils.py

Update geneformer/perturber_utils.py

Update geneformer/emb_extractor.py

Update geneformer/emb_extractor.py

Update for gene classification

Add input for custom gene token dictionary and add str to valid options

Update with gene classifier, custom token dict, and str validate options

change gene token dict path to token dictionary file to match tokenizer

Get the gene keys and gene list keys from the token dictionary instead of medians

Update geneformer/emb_extractor.py

Add emb_mode required argument into load_model

Fix typo

Add option for variable input_size and to add CLS/SEP Tokens