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--- |
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license: apache-2.0 |
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tags: |
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- biology |
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- dna |
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--- |
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# Dataset Card for Arabidopsis Genome Corpus |
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*** |
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### Dataset Description |
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This dataset consists of model plant genomes available on NCBI, specifically processed and cleaned for research and pre-training purposes. |
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The default configuration, "6kbp," provides DNA chunks of 6.2kbp with a 100bp overlap on each side. |
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The sequences are cleaned and processed to contain only the letters A, T, C, G, and N, ensuring high-quality genomic data suitable for various bioinformatics and machine learning applications. |
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### Dataset Summary |
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- Homepage: NCBI |
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- License: NCBI Policies |
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- Version: 1.1.0 |
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- Size: Variable depending on the configuration |
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- Default Configuration: 6kbp chunks |
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### Usage Example |
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``` |
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from datasets import load_dataset |
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# default chunk-size is 6000 |
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chunk_length = 1024 |
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repo = "suke-sho/arabidopsis_genome_corpus" |
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datasets = load_dataset(repo, trust_remote_code=True, chunk_length=chunk_length) |
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``` |
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### Acknowledgments |
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This dataset is an adaptation of the "InstaDeepAI/plant-multi-species-genomes" dataset & script. |
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Special thanks to InstaDeepAI for their original work. |
