README.md

---
task_categories:
- audio-classification
license: cc
tags:
- bird classification
- passive acoustic monitoring
---
## Dataset Description

- **Repository:** [https://github.com/DBD-research-group/GADME](https://github.com/DBD-research-group/BirdSet)
- **Paper:** [GADME](https://arxiv.org/abs/2403.10380)
- **Point of Contact:** [Lukas Rauch](mailto:[email protected])

### Datasets
We present the BirdSet benchmark that covers a comprehensive range of classification datasets in avian bioacoustics. 
We offer a static set of evaluation datasets and a varied collection of training datasets, enabling the application of diverse methodologies.

We have a complementary code base (soon to be made public): https://github.com/DBD-research-group/BirdSet
and a complementary paper (work in progress): https://arxiv.org/abs/2403.10380


|                                | train   |    test    | test_5s |  size (GB) |   #classes   |
|--------------------------------|--------:|-----------:|--------:|-----------:|-------------:|
| [PER][1] (Amazon Basin)        |  16,802 |     14,798 |  15,120 |   10.5     |     132      |
| [NES][2] (Colombia Costa Rica) |  16,117 |      6,952 |  24,480 |   14.2     |      89      |
| [UHH][3] (Hawaiian Islands)    |  3,626  |     59,583 |  36,637 |   4.92     | 25 tr, 27 te |
| [HSN][4] (high_sierras)        |  5,460  |     10,296 |  12,000 |   5.92     |      21      |
| [NBP][5] (NIPS4BPlus)          |  24,327 |      5,493 |     563 |   29.9     |      51      |
| [POW][6] (Powdermill Nature)   |  14,911 |     16,052 |   4,560 |   15.7     |      48      |
| [SSW][7] (Sapsucker Woods)     |  28,403 |     50,760 |  205,200|   35.2     |      81      |
| [SNE][8] (Sierra Nevada)       |  19,390 |     20,147 |  23,756 |   20.8     |      56      |
| [XCM][9] (Xenocanto Subset M)  |  89,798 |       x    |     x   |   89.3     |      409     |
| [XCL][10](Xenocanto Complete)  |  528,434|       x    |     x   |   484      |      9,734   |

[1]:  https://zenodo.org/records/7079124
[2]:  https://zenodo.org/records/7525349
[3]:  https://zenodo.org/records/7078499
[4]:  https://zenodo.org/records/7525805
[5]:  https://github.com/fbravosanchez/NIPS4Bplus
[6]:  https://zenodo.org/records/4656848
[7]:  https://zenodo.org/records/7018484
[8]:  https://zenodo.org/records/7050014
[9]:  https://xeno-canto.org/
[10]: https://xeno-canto.org

- We assemble a training dataset for each test dataset that is a subset of a complete Xeno-Canto (XC) snapshot. We extract all recordings that have vocalizations of the bird species appearing in the test dataset.
- We use the .ogg format for every recording and a sampling rate of 32 kHz.
- Each sample in the training dataset is a recording may have more than one vocalization of the corresponding bird species.
- Each recording in the training datasets has a unique recordist and the corresponding license from XC. We omit all recordings from XC that are CC-ND.
- The bird species are translated to ebird_codes
- Snapshot date of XC: 03/10/2024

**Train**
- Exclusively using focal audio data from XC with quality ratings A, B, C and excluding all recordings that are CC-ND.
- Each dataset is tailored for specific target species identified in the corresponding test soundscape files.
- We transform the scientific names of the birds into the corresponding ebird_code label. 
- We offer detected events and corresponding cluster assignments to identify bird sounds in each recording.
- We provide the full recordings from XC. These can generate multiple samples from a single instance.

**Test_5s**
- Task: Multilabel ("ebird_code_multilabel")
- Only soundscape data from Zenodo formatted acoording to the Kaggle evaluation scheme.
- Each recording is segmented into 5-second intervals where each ground truth bird vocalization is assigned to. 
- This contains segments without any labels which results in a [0] vector.

**Test**
- Task: Multiclass ("ebird_code")
- Only soundscape data sourced from Zenodo.
- We provide the full recording with the complete label set and specified bounding boxes.
- This dataset excludes recordings that do not contain bird calls ("no_call").

### Quick Use
- For multi-label evaluation with a segment-based evaluation use the test_5s column for testing.
- You could only load the first 5 seconds or a given event per recording to quickly create a training dataset.
- We recommend to start with HSN. It is a medium size dataset with a low number of overlaps within a segment

### Metadata

|                        | format                                                 |    description           | 
|------------------------|-------------------------------------------------------:|-------------------------:|
| audio                  |  Audio(sampling_rate=32_000, mono=True, decode=True)   | audio object from hf                         |  
| filepath               |  Value("string")                                       | relative path where the recording is stored                          |  
| start_time             |  Value("float64")                                      | only testdata: start time of a vocalization in s  | 
| end_time               |  Value("float64")                                      | only testdata: end time of a vocalzation in s | 
| low_freq               |  Value("int64")                                        | only testdata: low frequency bound for a vocalization in kHz                        |     
| high_freq              |  Value("int64")                                        | only testdata: high frequency bound for a vocalization in kHz                  |   
| ebird_code             |  ClassLabel(names=class_list)                          | assigned species label                   |  
| ebird_code_secondary   |  Sequence(datasets.Value("string"))                    | only traindata: possible secondary species in a recording |
| ebird_code_multilabel  |  Sequence(datasets.ClassLabel(names=class_list))       | assigned species label in a multilabel format                      |  
| call_type              |  Sequence(datasets.Value("string"))                    | only traindata: type of bird vocalization                        |     
| sex                    |  Value("string")                                       | only traindata: sex of bird species                        |    
| lat                    |  Value("float64")                                      | latitude of vocalization/recording in WGS84                       |     
| long                   |  Value("float64")                                      | lontitude of vocalization/recording in WGS84                         |   
| length                 |  Value("int64")                                        | length of the file in s                        |     
| microphone             |  Value("string")                                       | soundscape or focal recording with the microphone string                       |    
| license                |  Value("string")                                       | license of the recording                        |     
| source                 |  Value("string")                                       | source of the recording                        |    
| local_time             |  Value("string")                                       | local time of the recording                        |    
| detected_events        |  Sequence(datasets.Sequence(datasets.Value("float64")))| only traindata: detected audio events in a recording with bambird, tuples of start/end time                         |    
| event_cluster          |  Sequence(datasets.Value("int64"))                     | only traindata: detected audio events assigned to a cluster with bambird                        |    
| peaks                  |  Sequence(datasets.Value("float64"))                   | only traindata: peak event detected with scipy peak detection                        |     
| quality                |  Value("string")                                       | only traindata: recording quality of the recording (A,B,C)                        |     
| recordist              |  Value("string")                                       | only traindata: recordist of the recording                        |   

#### Example Metadata Train

```python
{'audio': {'path': '.ogg',
  'array': array([ 0.0008485 ,  0.00128899, -0.00317163, ...,  0.00228528,
          0.00270796, -0.00120562]),
  'sampling_rate': 32000},
 'filepath': '.ogg',
 'start_time': None,
 'end_time': None,
 'low_freq': None,
 'high_freq': None,
 'ebird_code': 0,
 'ebird_code_multilabel': [0],
 'ebird_code_secondary': ['plaant1', 'blfnun1', 'butwoo1', 'whtdov', 'undtin1', 'gryhaw3'],
 'call_type': 'song',
 'sex': 'uncertain',
 'lat': -16.0538,
 'long': -49.604,
 'length': 46,
 'microphone': 'focal',
 'license': '//creativecommons.org/licenses/by-nc-sa/4.0/',
 'source': 'xenocanto',
 'local_time': '18:37',
 'detected_events': [[0.736, 1.824],
  [9.936, 10.944],
  [13.872, 15.552],
  [19.552, 20.752],
  [24.816, 25.968],
  [26.528, 32.16],
  [36.112, 37.808],
  [37.792, 38.88],
  [40.048, 40.8],
  [44.432, 45.616]],
 'event_cluster': [0, 0, 0, 0, 0, -1, 0, 0, -1, 0],
 'peaks': [14.76479119037789, 41.16993396760847],
 'quality': 'A',
 'recordist': '...'}
```

#### Example Metadata Test5s

```python
{'audio': {'path': '.ogg',
  'array': array([-0.67190468, -0.9638235 , -0.99569213, ..., -0.01262935,
         -0.01533066, -0.0141047 ]),
  'sampling_rate': 32000},
 'filepath': '.ogg',
 'start_time': 0.0,
 'end_time': 5.0,
 'low_freq': 0,
 'high_freq': 3098,
 'ebird_code': None,
 'ebird_code_multilabel': [1, 10],
 'ebird_code_secondary': None,
 'call_type': None,
 'sex': None,
 'lat': 5.59,
 'long': -75.85,
 'length': None,
 'microphone': 'Soundscape',
 'license': 'Creative Commons Attribution 4.0 International Public License',
 'source': 'https://zenodo.org/record/7525349',
 'local_time': '4:30:29',
 'detected_events': None,
 'event_cluster': None,
 'peaks': None,
 'quality': None,
 'recordist': None}
```

### Citation Information

```
@article{birdset,
  author    = {Rauch, Lukas and
               Schwinger, Raphael and
               Wirth, Moritz and
               Heinrich, René and
               Lange, Jonas and
               Kahl, Stefan and
               Sick, Bernhard and
               Tomforde, Sven and
               Scholz, Christoph},
  title     = {BirdSet: A Multi-Task Benchmark For Classification In Avian Bioacoustics},
  journal   = {CoRR},
  volume    = {X},
  year      = {2024},
  url       = {X},
  archivePrefix = {arXiv},
}

Note that each test subset in the BirdSet dataset has its own citation. Please see the source to see
the correct citation for each contained dataset. Each file in the training dataset also has its own recordist noted. The licenses can be found in the metadata. 
```