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from pathlib import Path |
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GENE_MEDIAN_FILE = Path(__file__).parent / "gene_median_dictionary.pkl" |
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TOKEN_DICTIONARY_FILE = Path(__file__).parent / "token_dictionary.pkl" |
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ENSEMBL_DICTIONARY_FILE = Path(__file__).parent / "gene_name_id_dict.pkl" |
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from . import ( |
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collator_for_classification, |
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emb_extractor, |
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in_silico_perturber, |
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in_silico_perturber_stats, |
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pretrainer, |
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tokenizer, |
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) |
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from .collator_for_classification import ( |
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DataCollatorForCellClassification, |
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DataCollatorForGeneClassification, |
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) |
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from .emb_extractor import EmbExtractor, get_embs |
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from .in_silico_perturber import InSilicoPerturber |
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from .in_silico_perturber_stats import InSilicoPerturberStats |
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from .pretrainer import GeneformerPretrainer |
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from .tokenizer import TranscriptomeTokenizer |
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from . import classifier |
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from .classifier import Classifier |
