File size: 899 Bytes
9e9cca9 ea428cb 9e9cca9 c0e7b19 efec1c4 9e9cca9 941390d ea428cb |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 |
# ruff: noqa: F401
from pathlib import Path
GENE_MEDIAN_FILE = Path(__file__).parent / "gene_median_dictionary.pkl"
TOKEN_DICTIONARY_FILE = Path(__file__).parent / "token_dictionary.pkl"
ENSEMBL_DICTIONARY_FILE = Path(__file__).parent / "gene_name_id_dict.pkl"
from . import (
collator_for_classification,
emb_extractor,
in_silico_perturber,
in_silico_perturber_stats,
pretrainer,
tokenizer,
)
from .collator_for_classification import (
DataCollatorForCellClassification,
DataCollatorForGeneClassification,
)
from .emb_extractor import EmbExtractor, get_embs
from .in_silico_perturber import InSilicoPerturber
from .in_silico_perturber_stats import InSilicoPerturberStats
from .pretrainer import GeneformerPretrainer
from .tokenizer import TranscriptomeTokenizer
from . import classifier # noqa # isort:skip
from .classifier import Classifier # noqa # isort:skip |