metadata
base_model: westlake-repl/SaProt_650M_AF2
library_name: peft
Model Card for Model ID
This model is used to predict signal peptides on each site of amino acid sequences.
Task type
amino acid level clssification
Dataset description
The dataset is from SignalP 6.0 predicts all five types of signal peptides using protein language models. This dataset contains 7 classes:
S (0): Sec/SPI signal peptide | T (1): Tat/SPI or Tat/SPII signal peptide | L (2): Sec/SPII signal peptide | P (3): Sec/SPIII signal peptide | I (4): cytoplasm | M (5): transmembrane | O (6): extracellular
Model input type
Amino acid sequence
Performance
test_acc: 0.96
LoRA config
lora_dropout: 0.0
lora_alpha: 16
target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]
modules_to_save: ["classifier"]
Training config
class: AdamW
betas: (0.9, 0.98)
weight_decay: 0.01
learning rate: 1e-4
epoch: 10
batch size: 100
precision: 16-mixed