metadata
base_model: westlake-repl/SaProt_35M_AF2
library_name: peft
Model Card for Model ID
This model is used to predict ACE2 binding affinities with mutant SARSCoV-2 Omicron XBB.1.5 variants spike receptor-binding domain (RBD).
Task type
protein level regression
Dataset description
The dataset is from Deep mutational scans of XBB.1.5 and BQ.1.1 reveal ongoing epistatic drift during SARSCoV-2 evolution.
The label is the binding affinities level.
Model input type
Amino acid sequence
Performance
0.71 Spearman's ρ
LoRA config
lora_dropout: 0.0
lora_alpha: 16
target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]
modules_to_save: ["classifier"]
Training config
class: AdamW
betas: (0.9, 0.98)
weight_decay: 0.01
learning rate: 1e-4
epoch: 50
batch size: 100
precision: 16-mixed