BSC-NLP4BIA/bsc-bio-ehr-es-carmen-drugtemist

Training data

Model trained on the medication mentions of CARMEN-I and DrugTEMIST.

Citation

Please cite the following works:

@inproceedings{multicardioner2024overview,
  title = {{Overview of MultiCardioNER task at BioASQ 2024 on Medical Speciality and Language Adaptation of Clinical NER Systems for Spanish, English and Italian}},
  author = {Salvador Lima-López and Eulàlia Farré-Maduell and Jan Rodríguez-Miret and Miguel Rodríguez-Ortega and Livia Lilli and Jacopo Lenkowicz and Giovanna Ceroni and Jonathan Kossoff and Anoop Shah and Anastasios Nentidis and Anastasia Krithara and Georgios Katsimpras and Georgios Paliouras and Martin Krallinger},
  booktitle = {CLEF Working Notes},
  year = {2024},
  editor = {Faggioli, Guglielmo and Ferro, Nicola and Galuščáková, Petra and García Seco de Herrera, Alba}
}

@misc{carmen_physionet, 
  author = {Farre Maduell, Eulalia and Lima-Lopez, Salvador and Frid, Santiago Andres and Conesa, Artur and Asensio, Elisa and Lopez-Rueda, Antonio and Arino, Helena and Calvo, Elena and Bertran, Maria Jesús and Marcos, Maria Angeles and Nofre Maiz, Montserrat and Tañá Velasco, Laura and Marti, Antonia and Farreres, Ricardo and Pastor, Xavier and Borrat Frigola, Xavier and Krallinger, Martin}, 
  title = {{CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools (version 1.0.1)}}, 
  year = {2024}, 
  publisher = {PhysioNet}, 
  url = {https://doi.org/10.13026/x7ed-9r91} 
}

@article{physionet,
  author = {Ary L. Goldberger  and Luis A. N. Amaral  and Leon Glass  and Jeffrey M. Hausdorff  and Plamen Ch. Ivanov  and Roger G. Mark  and Joseph E. Mietus  and George B. Moody  and Chung-Kang Peng  and H. Eugene Stanley },
  title = {PhysioBank, PhysioToolkit, and PhysioNet  },
  journal = {Circulation},
  volume = {101},
  number = {23},
  pages = {e215-e220},
  year = {2000},
  doi = {10.1161/01.CIR.101.23.e215},
  URL = {https://www.ahajournals.org/doi/abs/10.1161/01.CIR.101.23.e215}
}

Contacting authors

jan.rodriguez [at] bsc.es

More information on data, usage, limitations, and performance metrics soon