Instructions to run the app

README.md

@@ -4,7 +4,22 @@
 
 ### Gradio app environment
 
-TODO
+Install from pip requirements file:
+
+```bash
+conda create -n retinopathy_app python=3.10
+conda activate retinopathy_app
+pip install -r requirements.txt
+python app.py
+```
+
+Install manually:
+
+```bash
+pip install pytorch --index-url  https://download.pytorch.org/whl/cpu
+pip install gradio
+pip install transformers
+```
 
 ### Training environment
 
@@ -27,4 +42,4 @@ Launch training:
 conda activate retinopathy_train
 python train.py
 ```
-The trained model will be put into `lightning_logs/`.
+The trained model will be put into `lightning_logs/`.

app.py

@@ -44,7 +44,7 @@ class App:
                     output = gr.Label(num_top_classes=len(DR_LABELMAP),
                                       label="Retinopathy level prediction")
                 with gr.Column(scale=4):
-                    gr.Markdown("![](https://media.githubusercontent.com/media/Obs01ete/retinopathy/master/media/logo1.png)")
+                    gr.Markdown("![](https://media.githubusercontent.com/media/SDAIA-KAUST-AI/diabetic-retinopathy-detection/main/media/logo1.png)")
             with gr.Row():
                 with gr.Column(scale=9, min_width=100):
                     image = gr.Image(label="Retina scan")

requirements.txt

@@ -1,2 +1,74 @@
 --extra-index-url https://download.pytorch.org/whl/cpu
+aiofiles==23.2.1
+altair==5.2.0
+annotated-types==0.6.0
+anyio==4.2.0
+attrs==23.2.0
+certifi==2023.11.17
+charset-normalizer==3.3.2
+click==8.1.7
+colorama==0.4.6
+contourpy==1.2.0
+cycler==0.12.1
+exceptiongroup==1.2.0
+fastapi==0.108.0
+ffmpy==0.3.1
+filelock==3.13.1
+fonttools==4.47.0
+fsspec==2023.12.2
+gradio==4.13.0
+gradio_client==0.8.0
+h11==0.14.0
+httpcore==1.0.2
+httpx==0.26.0
+huggingface-hub==0.20.2
+idna==3.6
+importlib-resources==6.1.1
+Jinja2==3.1.2
+jsonschema==4.20.0
+jsonschema-specifications==2023.12.1
+kiwisolver==1.4.5
+markdown-it-py==3.0.0
+MarkupSafe==2.1.3
+matplotlib==3.8.2
+mdurl==0.1.2
+mpmath==1.3.0
+networkx==3.2.1
+numpy==1.26.3
+orjson==3.9.10
+packaging==23.2
+pandas==2.1.4
+pillow==10.2.0
+pydantic==2.5.3
+pydantic_core==2.14.6
+pydub==0.25.1
+Pygments==2.17.2
+pyparsing==3.1.1
+python-dateutil==2.8.2
+python-multipart==0.0.6
+pytz==2023.3.post1
+PyYAML==6.0.1
+referencing==0.32.1
+regex==2023.12.25
+requests==2.31.0
+rich==13.7.0
+rpds-py==0.16.2
+safetensors==0.4.1
+semantic-version==2.10.0
+shellingham==1.5.4
+six==1.16.0
+sniffio==1.3.0
+starlette==0.32.0.post1
+sympy==1.12
+tokenizers==0.15.0
+tomlkit==0.12.0
+toolz==0.12.0
 torch==2.1.2+cpu
+tqdm==4.66.1
+transformers==4.36.2
+typer==0.9.0
+typing_extensions==4.9.0
+tzdata==2023.4
+urllib3==2.1.0
+uvicorn==0.25.0
+websockets==11.0.3