abuendia commited on
Commit
8000aa9
1 Parent(s): 30eb4a2

Add assets dir to config

Browse files
Files changed (1) hide show
  1. app/main.py +2 -0
app/main.py CHANGED
@@ -51,6 +51,7 @@ if args.s3_uri: # Use S3 path if exists
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  f"{args.s3_uri}/Interpretation_all_hg38_allembed_v4_natac/"
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  )
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  GET_CONFIG.motif_dir = f"{args.s3_uri}/interpret_natac/motif-clustering/"
 
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  cell_type_annot = pd.read_csv(
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  GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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  + "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
@@ -78,6 +79,7 @@ else: # Run with local data
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  f"{args.data}/Interpretation_all_hg38_allembed_v4_natac/"
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  )
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  GET_CONFIG.motif_dir = f"{args.data}/interpret_natac/motif-clustering/"
 
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  cell_type_annot = pd.read_csv(
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  GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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  + "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
 
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  f"{args.s3_uri}/Interpretation_all_hg38_allembed_v4_natac/"
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  )
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  GET_CONFIG.motif_dir = f"{args.s3_uri}/interpret_natac/motif-clustering/"
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+ GET_CONFIG.assets_dir = f"{args.s3_uri}/assets/"
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  cell_type_annot = pd.read_csv(
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  GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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  + "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
 
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  f"{args.data}/Interpretation_all_hg38_allembed_v4_natac/"
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  )
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  GET_CONFIG.motif_dir = f"{args.data}/interpret_natac/motif-clustering/"
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+ GET_CONFIG.assets_dir = f"{args.data}/assets/"
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  cell_type_annot = pd.read_csv(
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  GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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  + "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"