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Hotfix to align with atac_rna_data_processing
Browse files- app/main.py +2 -1
app/main.py
CHANGED
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@@ -41,8 +41,9 @@ GET_CONFIG.celltype.embed = True
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plt.rcParams["figure.dpi"] = 100
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if args.s3_uri: # Use S3 path if exists
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-
GET_CONFIG.s3_uri = args.s3_uri
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s3 = s3fs.S3FileSystem(anon=True)
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GET_CONFIG.celltype.data_dir = (
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f"{args.s3_uri}/pretrain_human_bingren_shendure_apr2023/fetal_adult/"
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)
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plt.rcParams["figure.dpi"] = 100
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if args.s3_uri: # Use S3 path if exists
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s3 = s3fs.S3FileSystem(anon=True)
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GET_CONFIG.s3_file_sys = s3
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GET_CONFIG.s3_uri = args.s3_uri
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GET_CONFIG.celltype.data_dir = (
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f"{args.s3_uri}/pretrain_human_bingren_shendure_apr2023/fetal_adult/"
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)
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