refactor: merge changes

Signed-off-by: jupyterjazz <[email protected]>

bert_padding.py

@@ -0,0 +1,220 @@
+# Adapted from https://github.com/mlcommons/training_results_v1.1/blob/main/NVIDIA/benchmarks/bert/implementations/pytorch/padding.py
+
+""""
+The implementation was further adapted from
+https://github.com/Dao-AILab/flash-attention/blob/43950dda456e095969d842fca7a73c5bfe3cecd0
+"""
+
+import torch
+import torch.nn.functional as F
+from einops import rearrange, repeat
+
+
+class IndexFirstAxis(torch.autograd.Function):
+    @staticmethod
+    def forward(ctx, input, indices):
+        ctx.save_for_backward(indices)
+        assert input.ndim >= 2
+        ctx.first_axis_dim, other_shape = input.shape[0], input.shape[1:]
+        second_dim = other_shape.numel()
+        # TD [2022-03-04] For some reason torch.gather is a bit faster than indexing.
+        # return input[indices]
+        return torch.gather(
+            rearrange(input, "b ... -> b (...)"), 0, repeat(indices, "z -> z d", d=second_dim)
+        ).reshape(-1, *other_shape)
+
+    @staticmethod
+    def backward(ctx, grad_output):
+        (indices,) = ctx.saved_tensors
+        assert grad_output.ndim >= 2
+        other_shape = grad_output.shape[1:]
+        grad_output = rearrange(grad_output, "b ... -> b (...)")
+        grad_input = torch.zeros(
+            [ctx.first_axis_dim, grad_output.shape[1]],
+            device=grad_output.device,
+            dtype=grad_output.dtype,
+        )
+        # TD [2022-03-04] For some reason torch.scatter is a bit faster than indexing.
+        # grad_input[indices] = grad_output
+        grad_input.scatter_(0, repeat(indices, "z -> z d", d=grad_output.shape[1]), grad_output)
+        return grad_input.reshape(ctx.first_axis_dim, *other_shape), None
+
+
+index_first_axis = IndexFirstAxis.apply
+
+
+class IndexPutFirstAxis(torch.autograd.Function):
+    @staticmethod
+    def forward(ctx, values, indices, first_axis_dim):
+        ctx.save_for_backward(indices)
+        assert indices.ndim == 1
+        assert values.ndim >= 2
+        output = torch.zeros(
+            first_axis_dim, *values.shape[1:], device=values.device, dtype=values.dtype
+        )
+        # TD [2022-03-04] For some reason torch.scatter is a bit faster than indexing.
+        output[indices] = values
+        # output.scatter_(0, repeat(indices, 'z -> z d', d=values.shape[1]), values)
+        return output
+
+    @staticmethod
+    def backward(ctx, grad_output):
+        (indices,) = ctx.saved_tensors
+        # TD [2022-03-04] For some reason torch.gather is a bit faster than indexing.
+        grad_values = grad_output[indices]
+        # grad_values = torch.gather(grad_output, 0, repeat(indices, 'z -> z d', d=grad_output.shape[1]))
+        return grad_values, None, None
+
+
+index_put_first_axis = IndexPutFirstAxis.apply
+
+
+class IndexFirstAxisResidual(torch.autograd.Function):
+    @staticmethod
+    def forward(ctx, input, indices):
+        ctx.save_for_backward(indices)
+        assert input.ndim >= 2
+        ctx.first_axis_dim, other_shape = input.shape[0], input.shape[1:]
+        second_dim = other_shape.numel()
+        # TD [2022-03-04] For some reason torch.gather is a bit faster than indexing.
+        output = input[indices]
+        # We don't want to reshape input (b ... -> b (...)) since it could change the channel_last
+        # memory format to channel_first. In other words, input might not be contiguous.
+        # If we don't detach, Pytorch complains about output being a view and is being modified inplace
+        return output, input.detach()
+
+    @staticmethod
+    def backward(ctx, grad_output, grad_residual):
+        (indices,) = ctx.saved_tensors
+        assert grad_output.ndim >= 2
+        other_shape = grad_output.shape[1:]
+        assert grad_residual.shape[1:] == other_shape
+        grad_input = grad_residual
+        # grad_input[indices] += grad_output
+        indices = indices.reshape(indices.shape[0], *((1,) * (grad_output.ndim - 1)))
+        indices = indices.expand_as(grad_output)
+        grad_input.scatter_add_(0, indices, grad_output)
+        return grad_input.reshape(ctx.first_axis_dim, *other_shape), None
+
+
+index_first_axis_residual = IndexFirstAxisResidual.apply
+
+
+def unpad_input(hidden_states, attention_mask):
+    """
+    Arguments:
+        hidden_states: (batch, seqlen, ...)
+        attention_mask: (batch, seqlen), bool / int, 1 means valid and 0 means not valid.
+    Return:
+        hidden_states: (total_nnz, ...), where total_nnz = number of tokens in selected in attention_mask.
+        indices: (total_nnz), the indices of non-masked tokens from the flattened input sequence.
+        cu_seqlens: (batch + 1), the cumulative sequence lengths, used to index into hidden_states.
+        max_seqlen_in_batch: int
+    """
+    seqlens_in_batch = attention_mask.sum(dim=-1, dtype=torch.int32)
+    indices = torch.nonzero(attention_mask.flatten(), as_tuple=False).flatten()
+    max_seqlen_in_batch = seqlens_in_batch.max().item()
+    cu_seqlens = F.pad(torch.cumsum(seqlens_in_batch, dim=0, dtype=torch.torch.int32), (1, 0))
+    # TD [2022-03-04] We don't want to index with a bool mask, because Pytorch will expand the
+    # bool mask, then call nonzero to get the indices, then index with those. The indices is @dim
+    # times larger than it needs to be, wasting memory. It's faster and more memory-efficient to
+    # index with integer indices. Moreover, torch's index is a bit slower than it needs to be,
+    # so we write custom forward and backward to make it a bit faster.
+    return (
+        index_first_axis(rearrange(hidden_states, "b s ... -> (b s) ..."), indices),
+        indices,
+        cu_seqlens,
+        max_seqlen_in_batch,
+    )
+
+
+def unpad_input_for_concatenated_sequences(hidden_states, attention_mask_in_length):
+    """
+    Supports concatenating short samples in one sequence. The attention_mask_in_length is utilized to mask other short samples. It helps efficient training of variant lengths-based samples (e.g., the supervised fine-tuning task in large language model).
+    The motivation for this function is explained [here](https://github.com/Dao-AILab/flash-attention/issues/432#issuecomment-1668822286).
+
+    For example, if batch = 3 and seqlen = 6, the attention_mask_in_length is:
+        ```
+        [
+          [2, 3, 0, 0, 0, 0],
+          [3, 2, 0, 0, 0, 0],
+          [6, 0, 0, 0, 0, 0]
+        ]
+        ```
+    , which refers to the 3D-attention mask:
+        ```
+        [
+          [
+            [1, 0, 0, 0, 0, 0],
+            [1, 1, 0, 0, 0, 0],
+            [0, 0, 1, 0, 0, 0],
+            [0, 0, 1, 1, 0, 0],
+            [0, 0, 1, 1, 1, 0],
+            [0, 0, 0, 0, 0, 1]
+          ],
+          [
+            [1, 0, 0, 0, 0, 0],
+            [1, 1, 0, 0, 0, 0],
+            [1, 1, 1, 0, 0, 0],
+            [0, 0, 0, 1, 0, 0],
+            [0, 0, 0, 1, 1, 0],
+            [0, 0, 0, 0, 0, 1]
+          ],
+          [
+            [1, 0, 0, 0, 0, 0],
+            [1, 1, 0, 0, 0, 0],
+            [1, 1, 1, 0, 0, 0],
+            [1, 1, 1, 1, 0, 0],
+            [1, 1, 1, 1, 1, 0],
+            [1, 1, 1, 1, 1, 1]
+          ]
+        ]
+        ```.
+
+    Arguments:
+        hidden_states: (batch, seqlen, ...)
+        attention_mask_in_length: (batch, seqlen), int, a nonzero number (e.g., 1, 2, 3, etc.) means length of concatenated sequence in b-th batch, and 0 means none.
+    Return:
+        hidden_states: (total_nnz, ...), where total_nnz = number of tokens in selected in attention_mask.
+        indices: (total_nnz), the indices of non-masked tokens from the flattened input sequence.
+        cu_seqlens: (batch + 1), the cumulative sequence lengths, used to index into hidden_states.
+        max_seqlen_in_batch: int
+    """
+    length = attention_mask_in_length.sum(dim=-1)
+    seqlen = attention_mask_in_length.size(-1)
+    attention_mask_2d = torch.arange(seqlen, device=length.device, dtype=length.dtype).expand(len(length),
+                                                                                              seqlen) < length.unsqueeze(
+        1)
+    real_indices_idx = torch.nonzero(attention_mask_in_length.flatten(), as_tuple=False).flatten()
+    seqlens_in_batch = attention_mask_in_length.flatten()[real_indices_idx]
+    indices = torch.nonzero(attention_mask_2d.flatten(), as_tuple=False).flatten()
+    max_seqlen_in_batch = seqlens_in_batch.max().item()
+    cu_seqlens = F.pad(torch.cumsum(seqlens_in_batch, dim=0, dtype=torch.torch.int32), (1, 0))
+    # TD [2022-03-04] We don't want to index with a bool mask, because Pytorch will expand the
+    # bool mask, then call nonzero to get the indices, then index with those. The indices is @dim
+    # times larger than it needs to be, wasting memory. It's faster and more memory-efficient to
+    # index with integer indices. Moreover, torch's index is a bit slower than it needs to be,
+    # so we write custom forward and backward to make it a bit faster.
+    return (
+        index_first_axis(rearrange(hidden_states, "b s ... -> (b s) ..."), indices),
+        indices,
+        cu_seqlens,
+        max_seqlen_in_batch,
+    )
+
+
+def pad_input(hidden_states, indices, batch, seqlen):
+    """
+    Arguments:
+        hidden_states: (total_nnz, ...), where total_nnz = number of tokens in selected in attention_mask.
+        indices: (total_nnz), the indices that represent the non-masked tokens of the original padded input sequence.
+        batch: int, batch size for the padded sequence.
+        seqlen: int, maximum sequence length for the padded sequence.
+    Return:
+        hidden_states: (batch, seqlen, ...)
+    """
+    dim = hidden_states.shape[-1]
+    # output = torch.zeros((batch * seqlen), dim, device=hidden_states.device, dtype=hidden_states.dtype)
+    # output[indices] = hidden_states
+    output = index_put_first_axis(hidden_states, indices, batch * seqlen)
+    return rearrange(output, "(b s) ... -> b s ...", b=batch)

block.py

@@ -0,0 +1,401 @@
+# Copyright (c) 2024, Tri Dao.
+
+""""
+The implementation was adopted from
+https://github.com/Dao-AILab/flash-attention/blob/43950dda456e095969d842fca7a73c5bfe3cecd0
+"""
+
+from functools import partial
+from typing import Optional
+
+import torch
+import torch.nn as nn
+from torch import Tensor
+from torchvision.ops import StochasticDepth
+
+from .mha import MHA
+from .mlp import Mlp
+
+try:
+    from flash_attn.ops.triton.layer_norm import layer_norm_fn, RMSNorm
+except ImportError:
+    layer_norm_fn, RMSNorm = None, None
+
+
+class Block(nn.Module):
+    def __init__(
+        self,
+        dim,
+        mixer_cls=None,
+        mlp_cls=None,
+        norm_cls=nn.LayerNorm,
+        dropout_cls=nn.Dropout,
+        prenorm=True,
+        resid_dropout1=0.0,
+        resid_dropout2=0.0,
+        drop_path1=0.0,
+        drop_path2=0.0,
+        fused_dropout_add_ln=False,
+        return_residual=False,
+        residual_in_fp32=False,
+        sequence_parallel=False,
+        mark_shared_params=False,
+    ):
+        """
+        For prenorm=True, this Block has a slightly different structure compared to a regular
+        prenorm Transformer block.
+        The standard block is: LN -> MHA -> Dropout -> Add -> LN -> MLP -> Dropout -> Add.
+        [Ref: https://arxiv.org/abs/2002.04745]
+        Here we have: Dropout -> Add -> LN -> MHA -> Dropout -> Add -> LN -> MLP, returning both
+        the hidden_states (output of the MLP) and the residual.
+        This is for performance reasons, as we can fuse the dropout, add and LayerNorm.
+        The residual needs to be provided (except for the very first block).
+
+        For prenorm=False, this Block has the same structure as a regular postnorm Transformer
+        block: MHA -> Dropout -> Add -> LN -> MLP -> Dropout -> Add -> LN.
+
+        return_residual: whether each of the sub-layers (mixer and mlp) will return the residual.
+        This is for performance reason: for post-norm architecture, returning the input allows us
+        to fuse the backward of nn.Linear with the residual connection.
+        """
+        super().__init__()
+        self.prenorm = prenorm
+        self.fused_dropout_add_ln = fused_dropout_add_ln
+        self.return_residual = return_residual
+        self.residual_in_fp32 = residual_in_fp32
+        if self.residual_in_fp32:
+            assert self.prenorm, "residual_in_fp32 is only compatible with prenorm=True"
+        if mixer_cls is None:
+            mixer_cls = partial(MHA, num_heads=dim // 64)
+        if mlp_cls is None:
+            mlp_cls = partial(Mlp, hidden_features=4 * dim)
+        self.mixer = mixer_cls(dim)
+        self.dropout1 = dropout_cls(resid_dropout1)
+        self.drop_path1 = StochasticDepth(drop_path1, mode="row")
+        self.norm1 = norm_cls(dim)
+        self.mlp = mlp_cls(dim)
+        if not isinstance(self.mlp, nn.Identity):
+            self.dropout2 = dropout_cls(resid_dropout2)
+            self.drop_path2 = StochasticDepth(drop_path2, mode="row")
+            self.norm2 = norm_cls(dim)
+
+        if self.fused_dropout_add_ln:
+            assert layer_norm_fn is not None, "Triton is not installed"
+            assert isinstance(self.norm1, (nn.LayerNorm, RMSNorm)) and isinstance(
+                self.dropout1, nn.Dropout
+            )
+
+        # TD [2023-01-07]: TODO: During training, if sequence_parallel is False and dropout != 0.0,
+        # then the input to each worker in the tensor parallel group will be different.
+        # This would produce wrong outputs? Somehow we'd need to sync the RNG state across workers.
+        # For now this is not an issue because we always use sequence_parallel=True during training
+        # and only use sequence_parallel=False during inference.
+
+        # Mark the norm parameters as "sequence_parallel" so that we run all-reduce on their grads.
+        if sequence_parallel:
+            for p in self.norm1.parameters():
+                p._sequence_parallel = True
+            if hasattr(self, "norm2"):
+                for p in self.norm2.parameters():
+                    p._sequence_parallel = True
+        # Mark the norm parameters as "shared_params" so that we sync their values at init.
+        if mark_shared_params:
+            for p in self.norm1.parameters():
+                p._shared_params = True
+            if hasattr(self, "norm2"):
+                for p in self.norm2.parameters():
+                    p._shared_params = True
+
+    def allocate_inference_cache(self, batch_size, max_seqlen, dtype=None, **kwargs):
+        return self.mixer.allocate_inference_cache(batch_size, max_seqlen, dtype=dtype, **kwargs)
+
+    def forward(
+        self,
+        hidden_states: Tensor,
+        residual: Optional[Tensor] = None,
+        mixer_subset=None,
+        mixer_kwargs=None,
+    ):
+        r"""Pass the input through the encoder layer.
+
+        Args:
+            hidden_states: the sequence to the encoder layer (required).
+            residual: if postnorm, residual=None, If prenorm, hidden_states = Attn/MLP(LN(residual))
+            mixer_subset: for cross-attention only. If not None, will take a subset of x
+                before applying the query projection. Useful for e.g., ViT where we only care
+                about the CLS token in the last layer.
+        """
+        if self.prenorm:
+            if not self.fused_dropout_add_ln:
+                dropped = self.drop_path1(self.dropout1(hidden_states))
+                residual = (dropped + residual) if residual is not None else dropped
+                hidden_states = self.norm1(residual.to(dtype=self.norm1.weight.dtype))
+                if self.residual_in_fp32:
+                    residual = residual.to(torch.float32)
+            else:
+                if self.drop_path1.p == 0 or not self.training:
+                    rowscale1 = None
+                else:
+                    rowscale1 = self.drop_path1(
+                        torch.ones(
+                            hidden_states.shape[:-1],
+                            device=hidden_states.device,
+                            dtype=hidden_states.dtype,
+                        )
+                    )
+                hidden_states, residual = layer_norm_fn(
+                    hidden_states,
+                    self.norm1.weight,
+                    self.norm1.bias,
+                    residual=residual,
+                    eps=self.norm1.eps,
+                    dropout_p=self.dropout1.p if self.training else 0.0,
+                    rowscale=rowscale1,
+                    prenorm=True,
+                    residual_in_fp32=self.residual_in_fp32,
+                    is_rms_norm=isinstance(self.norm1, RMSNorm)
+                )
+            if mixer_kwargs is None:
+                mixer_kwargs = {}
+            if mixer_subset is not None:
+                mixer_kwargs["mixer_subset"] = mixer_subset
+            hidden_states = self.mixer(hidden_states, **mixer_kwargs)
+            if mixer_subset is not None:
+                residual = residual[:, mixer_subset]
+            if not isinstance(self.mlp, nn.Identity):
+                if not self.fused_dropout_add_ln:
+                    dropped = self.drop_path2(self.dropout2(hidden_states))
+                    residual = (dropped + residual) if residual is not None else dropped
+                    hidden_states = self.norm2(residual.to(dtype=self.norm2.weight.dtype))
+                    if self.residual_in_fp32:
+                        residual = residual.to(torch.float32)
+                else:
+                    if self.drop_path2.p == 0 or not self.training:
+                        rowscale2 = None
+                    else:
+                        rowscale2 = self.drop_path2(
+                            torch.ones(
+                                hidden_states.shape[:-1],
+                                device=hidden_states.device,
+                                dtype=hidden_states.dtype,
+                            )
+                        )
+                    hidden_states, residual = layer_norm_fn(
+                        hidden_states,
+                        self.norm2.weight,
+                        self.norm2.bias,
+                        residual=residual,
+                        eps=self.norm2.eps,
+                        dropout_p=self.dropout2.p if self.training else 0.0,
+                        rowscale=rowscale2,
+                        prenorm=True,
+                        residual_in_fp32=self.residual_in_fp32,
+                        is_rms_norm=isinstance(self.norm2, RMSNorm)
+                    )
+                hidden_states = self.mlp(hidden_states)
+            return hidden_states, residual
+        else:
+            assert residual is None
+            mixer_out = self.mixer(
+                hidden_states, **(mixer_kwargs if mixer_kwargs is not None else {})
+            )
+            if self.return_residual:  # mixer out is actually a pair here
+                mixer_out, hidden_states = mixer_out
+            if not self.fused_dropout_add_ln:
+                hidden_states = self.norm1(
+                    (self.drop_path1(self.dropout1(mixer_out)) + hidden_states).to(
+                        dtype=self.norm1.weight.dtype
+                    )
+                )
+            else:
+                if self.drop_path1.p == 0 or not self.training:
+                    rowscale1 = None
+                else:
+                    rowscale1 = self.drop_path1(
+                        torch.ones(
+                            mixer_out.shape[:-1], device=mixer_out.device, dtype=mixer_out.dtype
+                        )
+                    )
+                hidden_states = layer_norm_fn(
+                    mixer_out,
+                    self.norm1.weight,
+                    self.norm1.bias,
+                    residual=hidden_states,
+                    eps=self.norm1.eps,
+                    dropout_p=self.dropout1.p if self.training else 0.0,
+                    rowscale=rowscale1,
+                    prenorm=False,
+                    is_rms_norm=isinstance(self.norm1, RMSNorm)
+                )
+            if not isinstance(self.mlp, nn.Identity):
+                mlp_out = self.mlp(hidden_states)
+                if self.return_residual:  # mlp out is actually a pair here
+                    mlp_out, hidden_states = mlp_out
+                if not self.fused_dropout_add_ln:
+                    hidden_states = self.norm2(
+                        (self.drop_path2(self.dropout2(mlp_out)) + hidden_states).to(
+                            dtype=self.norm2.weight.dtype
+                        )
+                    )
+                else:
+                    if self.drop_path2.p == 0 or not self.training:
+                        rowscale2 = None
+                    else:
+                        rowscale2 = self.drop_path2(
+                            torch.ones(
+                                mlp_out.shape[:-1], device=mlp_out.device, dtype=mlp_out.dtype
+                            )
+                        )
+                    hidden_states = layer_norm_fn(
+                        mlp_out,
+                        self.norm2.weight,
+                        self.norm2.bias,
+                        residual=hidden_states,
+                        eps=self.norm2.eps,
+                        dropout_p=self.dropout2.p if self.training else 0.0,
+                        rowscale=rowscale2,
+                        prenorm=False,
+                        is_rms_norm=isinstance(self.norm2, RMSNorm)
+                    )
+            return hidden_states
+
+
+class ParallelBlock(nn.Module):
+    """The attention (mixer) and MLP blocks are done in parallel, similar to GPT-J, GPT-NeoX,
+    and PaLM.
+    """
+
+    def __init__(
+        self,
+        dim,
+        mixer_cls=None,
+        mlp_cls=None,
+        norm_cls=nn.LayerNorm,
+        dropout_cls=nn.Dropout,
+        resid_dropout1=0.0,
+        resid_dropout2=0.0,
+        tied_norm=False,
+        fused_dropout_add_ln=False,
+        residual_in_fp32=False,
+        sequence_parallel=False,
+        mark_shared_params=False,
+    ):
+        """
+        This Block has a slightly different structure compared to a regular
+        prenorm Transformer block.
+        The standard block is: LN -> MHA / MLP -> Dropout -> Add.
+        [Ref: https://arxiv.org/abs/2002.04745]
+        Here we have: Dropout -> Add -> LN -> MHA / MLP, returning both
+        the hidden_states (output1 of the MHA / MLP) and the residual.
+        This is for performance reasons, as we can fuse the dropout, add and LayerNorm.
+        The residual needs to be provided (except for the very first block).
+        """
+        super().__init__()
+        self.tied_norm = tied_norm
+        self.fused_dropout_add_ln = fused_dropout_add_ln
+        self.residual_in_fp32 = residual_in_fp32
+        if mixer_cls is None:
+            mixer_cls = partial(MHA, num_heads=dim // 64)
+        if mlp_cls is None:
+            mlp_cls = partial(Mlp, hidden_features=4 * dim)
+        self.mixer = mixer_cls(dim)
+        self.dropout1 = dropout_cls(resid_dropout1)
+        self.norm1 = norm_cls(dim)
+        self.mlp = mlp_cls(dim)
+        self.dropout2 = dropout_cls(resid_dropout2)
+        if not self.tied_norm:
+            self.norm2 = norm_cls(dim)
+
+        if self.fused_dropout_add_ln:
+            assert layer_norm_fn is not None, "Triton is not installed"
+            assert isinstance(self.norm1, (nn.LayerNorm, RMSNorm)) and isinstance(
+                self.dropout1, nn.Dropout
+            )
+
+        # TD [2023-01-07]: TODO: During training, if sequence_parallel is False and dropout != 0.0,
+        # then the input to each worker in the tensor parallel group will be different.
+        # This would produce wrong outputs? Somehow we'd need to sync the RNG state across workers.
+        # For now this is not an issue because we always use sequence_parallel=True during training
+        # and only use sequence_parallel=False during inference.
+
+        # Mark the norm parameters as "sequence_parallel" so that we run all-reduce on their grads.
+        if sequence_parallel:
+            for p in self.norm1.parameters():
+                p._sequence_parallel = True
+            if hasattr(self, "norm2"):
+                for p in self.norm2.parameters():
+                    p._sequence_parallel = True
+        # Mark the norm parameters as "shared_params" so that we sync their values at init.
+        if mark_shared_params:
+            for p in self.norm1.parameters():
+                p._shared_params = True
+            if hasattr(self, "norm2"):
+                for p in self.norm2.parameters():
+                    p._shared_params = True
+
+    def allocate_inference_cache(self, batch_size, max_seqlen, dtype=None, **kwargs):
+        return self.mixer.allocate_inference_cache(batch_size, max_seqlen, dtype=dtype, **kwargs)
+
+    def forward(
+        self,
+        hidden_states1: Tensor,
+        hidden_states2: Optional[Tensor] = None,
+        residual: Optional[Tensor] = None,
+        mixer_kwargs=None,
+    ):
+        r"""Pass the input through the encoder layer.
+
+        Args:
+            hidden_states1: the output of the previous attention (mixer) or embedding layer.
+            hidden_states2: the output of the previous MLP layer (if None, will use hidden_states1).
+            residual.
+        """
+        # TODO: Ideally we should only do the allgather / allreduce once for
+        # the Linear to MLP & Attention
+        if not self.fused_dropout_add_ln:
+            dropped1 = self.dropout1(hidden_states1)
+            # For the very 1st block, we only want 1 dropout, not two different dropouts
+            if hidden_states2 is not None:
+                dropped2 = self.dropout2(hidden_states2)
+                residual = (
+                    (residual + dropped1 + dropped2)
+                    if residual is not None
+                    else dropped1 + dropped2
+                )
+            else:
+                residual = (residual + dropped1) if residual is not None else dropped1
+            hidden_states1 = self.norm1(residual.to(dtype=self.norm1.weight.dtype))
+            hidden_states2 = (
+                self.norm2(residual.to(dtype=self.norm2.weight.dtype))
+                if not self.tied_norm
+                else hidden_states1
+            )
+            if self.residual_in_fp32:
+                residual = residual.to(torch.float32)
+        else:
+            weight2, bias2 = (
+                (self.norm2.weight, self.norm2.bias) if not self.tied_norm else (None, None)
+            )
+            hidden_states1, *rest, residual = layer_norm_fn(
+                hidden_states1,
+                self.norm1.weight,
+                self.norm1.bias,
+                residual=residual,
+                x1=hidden_states2,
+                weight1=weight2,
+                bias1=bias2,
+                eps=self.norm1.eps,
+                dropout_p=self.dropout1.p if self.training else 0.0,
+                prenorm=True,
+                residual_in_fp32=self.residual_in_fp32,
+                is_rms_norm=isinstance(self.norm1, RMSNorm)
+            )
+            if self.tied_norm:
+                hidden_states2 = hidden_states1
+            else:
+                hidden_states2, = rest
+        if mixer_kwargs is None:
+            mixer_kwargs = {}
+        hidden_states1 = self.mixer(hidden_states1, **mixer_kwargs)
+        hidden_states2 = self.mlp(hidden_states2)
+        return hidden_states1, hidden_states2, residual

configuration_bert.py

@@ -91,6 +91,9 @@ class JinaBertConfig(PretrainedConfig):
         assert 'max_position_embeddings' not in kwargs
         super().__init__(pad_token_id=pad_token_id, **kwargs)
 
+        if fused_mlp and hidden_act not in ["gelu_new", "gelu_fast", "gelu_pytorch_tanh"]:
+            raise ValueError('Fused MLP only supports approximate gelu')
+
         self.vocab_size = vocab_size
         self.hidden_size = hidden_size
         self.num_hidden_layers = num_hidden_layers
@@ -113,4 +116,4 @@ class JinaBertConfig(PretrainedConfig):
         self.num_tasks = num_tasks
         self.use_flash_attn = use_flash_attn
         self.use_qk_norm = use_qk_norm
-        self.emb_pooler = emb_pooler
+        self.emb_pooler = emb_pooler

embedding.py

@@ -0,0 +1,162 @@
+# Copyright (c) 2022, Tri Dao.
+
+""""
+The implementation was adopted from
+https://github.com/Dao-AILab/flash-attention/blob/43950dda456e095969d842fca7a73c5bfe3cecd0/flash_attn/models/bert.py
+"""
+
+import torch
+import torch.nn as nn
+from torch import Tensor
+
+
+class GPT2Embeddings(nn.Module):
+    def __init__(
+        self,
+        embed_dim,
+        vocab_size,
+        max_position_embeddings,
+        padding_idx=None,
+        word_embed_proj_dim=None,
+        device=None,
+        dtype=None,
+    ):
+        """
+        If max_position_embeddings <= 0, there's no position embeddings
+        If word_embe_proj_dim is not None (e.g., OPT-350m), we embed to that dimension
+            the project up to embed_dim
+        """
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        if word_embed_proj_dim is None:
+            self.word_embeddings = nn.Embedding(
+                vocab_size, embed_dim, padding_idx=padding_idx, **factory_kwargs
+            )
+            self.project_in = None
+        else:
+            self.word_embeddings = nn.Embedding(
+                vocab_size, word_embed_proj_dim, padding_idx=padding_idx, **factory_kwargs
+            )
+            self.project_in = nn.Linear(
+                word_embed_proj_dim, embed_dim, bias=False, **factory_kwargs
+            )
+        self.max_position_embeddings = max_position_embeddings
+        if self.max_position_embeddings > 0:
+            self.position_embeddings = nn.Embedding(
+                max_position_embeddings, embed_dim, **factory_kwargs
+            )
+
+    def forward(self, input_ids, position_ids=None):
+        """
+        input_ids: (batch, seqlen)
+        position_ids: (batch, seqlen)
+        """
+        batch_size, seqlen = input_ids.shape
+        embeddings = self.word_embeddings(input_ids)
+        if self.project_in is not None:
+            embeddings = self.project_in(embeddings)
+        if self.max_position_embeddings > 0:
+            if position_ids is None:
+                position_ids = torch.arange(seqlen, dtype=torch.long, device=input_ids.device)
+            position_embeddings = self.position_embeddings(position_ids)
+            embeddings = embeddings + position_embeddings
+        return embeddings
+
+
+class BertEmbeddings(nn.Module):
+    def __init__(
+        self,
+        embed_dim,
+        vocab_size,
+        max_position_embeddings,
+        type_vocab_size,
+        padding_idx=None,
+        device=None,
+        dtype=None,
+    ):
+        """
+        If max_position_embeddings <= 0, there's no position embeddings
+        If type_vocab_size <= 0, there's no token type embeddings
+        """
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        self.word_embeddings = nn.Embedding(
+            vocab_size, embed_dim, padding_idx=padding_idx, **factory_kwargs
+        )
+        self.max_position_embeddings = max_position_embeddings
+        self.type_vocab_size = type_vocab_size
+        if self.max_position_embeddings > 0:
+            self.position_embeddings = nn.Embedding(
+                max_position_embeddings, embed_dim, **factory_kwargs
+            )
+        if self.type_vocab_size > 0:
+            self.token_type_embeddings = nn.Embedding(type_vocab_size, embed_dim, **factory_kwargs)
+
+    def forward(self, input_ids, position_ids=None, token_type_ids=None):
+        """
+        input_ids: (batch, seqlen)
+        position_ids: (batch, seqlen)
+        token_type_ids: (batch, seqlen)
+        """
+        batch_size, seqlen = input_ids.shape
+        embeddings = self.word_embeddings(input_ids)
+        if self.max_position_embeddings > 0:
+            if position_ids is None:
+                position_ids = torch.arange(seqlen, dtype=torch.long, device=input_ids.device)
+            position_embeddings = self.position_embeddings(position_ids)
+            embeddings = embeddings + position_embeddings
+        if self.type_vocab_size > 0:
+            if token_type_ids is None:
+                token_type_ids = torch.zeros(seqlen, dtype=torch.long, device=input_ids.device)
+            token_type_embeddings = self.token_type_embeddings(token_type_ids)
+            embeddings = embeddings + token_type_embeddings
+        return embeddings
+
+
+class VocabParallelEmbedding(nn.Embedding):
+    def __init__(self, num_embeddings, *args, process_group=None, padding_idx=None, **kwargs):
+        self.process_group = process_group
+        if process_group is not None:
+            world_size = torch.distributed.get_world_size(process_group)
+            if num_embeddings % world_size != 0:
+                raise ValueError(
+                    f"num_embeddings ({num_embeddings}) must be divisible by "
+                    f"world_size ({world_size})"
+                )
+            if world_size > 1 and padding_idx is not None:
+                raise RuntimeError("ParallelEmbedding does not support padding_idx")
+        else:
+            world_size = 1
+        super().__init__(num_embeddings // world_size, *args, padding_idx=padding_idx, **kwargs)
+
+    def forward(self, input: Tensor) -> Tensor:
+        if self.process_group is None:
+            return super().forward(input)
+        else:
+            rank = torch.distributed.get_rank(self.process_group)
+            vocab_size = self.num_embeddings
+            vocab_start_index, vocab_end_index = rank * vocab_size, (rank + 1) * vocab_size
+            # Create a mask of valid vocab ids (1 means it needs to be masked).
+            input_ids_mask = (input < vocab_start_index) | (input >= vocab_end_index)
+            input = input - vocab_start_index
+            input[input_ids_mask] = 0
+            embeddings = super().forward(input)
+            embeddings[input_ids_mask] = 0.0
+            return embeddings
+
+
+class ColumnParallelEmbedding(nn.Embedding):
+    def __init__(self, num_embeddings, embedding_dim, *args, process_group=None, **kwargs):
+        self.process_group = process_group
+        if process_group is not None:
+            world_size = torch.distributed.get_world_size(process_group)
+            if embedding_dim % world_size != 0:
+                raise ValueError(
+                    f"embedding_dim ({embedding_dim}) must be divisible by "
+                    f"world_size ({world_size})"
+                )
+        else:
+            world_size = 1
+        super().__init__(num_embeddings, embedding_dim // world_size, *args, **kwargs)
+
+

mha.py

@@ -0,0 +1,817 @@
+# Copyright (c) 2023, Tri Dao.
+
+""""
+The implementation was adopted from
+https://github.com/Dao-AILab/flash-attention/blob/43950dda456e095969d842fca7a73c5bfe3cecd0
+and made modifications to
+    - support QK normalization
+    - make ALiBi run with MHA (needed to cast alibi slopes to fp32)
+    - make ALiBi run on CPU
+"""
+
+import math
+from functools import partial
+
+import torch
+import torch.nn as nn
+from einops import rearrange, repeat
+
+try:
+    from flash_attn import (
+        flash_attn_kvpacked_func,
+        flash_attn_qkvpacked_func,
+        flash_attn_varlen_kvpacked_func,
+        flash_attn_varlen_qkvpacked_func,
+        flash_attn_with_kvcache,
+    )
+except ImportError:
+    flash_attn_varlen_qkvpacked_func, flash_attn_varlen_kvpacked_func = None, None
+    flash_attn_qkvpacked_func, flash_attn_kvpacked_func = None, None
+    flash_attn_with_kvcache = None
+
+try:
+    from flash_attn.ops.fused_dense import ColumnParallelLinear, FusedDense, RowParallelLinear
+except ImportError:
+    FusedDense, ColumnParallelLinear, RowParallelLinear = None, None, None
+
+try:
+    from flash_attn.layers.rotary import RotaryEmbedding
+except ImportError:
+    RotaryEmbedding = None
+
+
+# From https://github.com/ofirpress/attention_with_linear_biases/blob/4b92f28a005ead2567abe2359f633e73e08f3833/fairseq/models/transformer.py#L742
+def get_alibi_slopes(nheads):
+    def get_slopes_power_of_2(nheads):
+        start = 2 ** (-(2 ** -(math.log2(nheads) - 3)))
+        ratio = start
+        return [start * ratio**i for i in range(nheads)]
+
+    if math.log2(nheads).is_integer():
+        return get_slopes_power_of_2(nheads)
+    else:
+        closest_power_of_2 = 2 ** math.floor(math.log2(nheads))
+        return (
+            get_slopes_power_of_2(closest_power_of_2)
+            + get_alibi_slopes(2 * closest_power_of_2)[0::2][: nheads - closest_power_of_2]
+        )
+
+class MultiHeadLayernorm(nn.Module):
+    def __init__(self, head_dim, num_heads, eps=1e-05, shared_normalization=False):
+        super().__init__()
+        if shared_normalization:
+            self._reduce_dims = (-2, -1)
+        else:
+            self._reduce_dims = (-1,)
+        self.weight = nn.Parameter(torch.ones((num_heads, head_dim)))
+        self.bias = nn.Parameter(torch.zeros((num_heads, head_dim)))
+        self.eps = eps
+
+    def forward(self, x):
+        var, mean = torch.var_mean(x, dim=self._reduce_dims, keepdim=True)
+        x = (x - mean) / torch.sqrt(var + self.eps)
+        return self.weight * x + self.bias
+
+class FlashSelfAttention(nn.Module):
+    """Implement the scaled dot product attention with softmax.
+    Arguments
+    ---------
+        softmax_scale: The temperature to use for the softmax attention.
+                      (default: 1/sqrt(d_keys) where d_keys is computed at
+                      runtime)
+        attention_dropout: The dropout rate to apply to the attention
+                           (default: 0.0)
+    """
+
+    def __init__(
+        self,
+        causal=False,
+        softmax_scale=None,
+        attention_dropout=0.0,
+        window_size=(-1, -1),
+        alibi_slopes=None,
+        deterministic=False,
+        qk_norm_kwargs=None,
+    ):
+        super().__init__()
+        assert flash_attn_varlen_qkvpacked_func is not None, "FlashAttention is not installed"
+        assert flash_attn_qkvpacked_func is not None, "FlashAttention is not installed"
+        self.causal = causal
+        self.softmax_scale = softmax_scale
+        self.drop = nn.Dropout(attention_dropout)
+        self.register_buffer("alibi_slopes", alibi_slopes, persistent=False)
+        self.window_size = window_size
+        self.deterministic = deterministic
+        if qk_norm_kwargs is not None:
+            self.qk_norm = True
+            self.q_layernorm = MultiHeadLayernorm(**qk_norm_kwargs)
+            self.k_layernorm = MultiHeadLayernorm(**qk_norm_kwargs)
+        else:
+            self.qk_norm = False
+            self.q_layernorm = None
+            self.k_layernorm = None
+
+    def forward(self, qkv, causal=None, cu_seqlens=None, max_seqlen=None):
+        """Implements the multihead softmax attention.
+        Arguments
+        ---------
+            qkv: The tensor containing the query, key, and value.
+                If cu_seqlens is None and max_seqlen is None, then qkv has shape (B, S, 3, H, D).
+                If cu_seqlens is not None and max_seqlen is not None, then qkv has shape
+                (total, 3, H, D), where total is the sum of the sequence lengths in the batch.
+            causal: if passed, will override self.causal
+            cu_seqlens: (batch_size + 1,), dtype torch.int32. The cumulative sequence lengths
+                of the sequences in the batch, used to index into qkv.
+            max_seqlen: int. Maximum sequence length in the batch.
+        Returns:
+        --------
+            out: (total, H, D) if cu_seqlens is not None and max_seqlen is not None,
+                else (B, S, H, D).
+        """
+        assert qkv.dtype in [torch.float16, torch.bfloat16]
+        assert qkv.is_cuda
+        if self.qk_norm:
+            if cu_seqlens is None:
+                assert qkv.shape[2] == 3
+                q, k, v = qkv.unbind(2)
+                q = self.q_layernorm(q)
+                k = self.k_layernorm(k)
+                qkv = torch.stack([q, k, v], dim=2)
+            else:
+                assert qkv.shape[1] == 3
+                q, k, v = qkv.unbind(1)
+                q = self.q_layernorm(q)
+                k = self.k_layernorm(k)
+                qkv = torch.stack([q, k, v], dim=1)
+        causal = self.causal if causal is None else causal
+        unpadded = cu_seqlens is not None
+        if self.alibi_slopes is not None:
+            self.alibi_slopes = self.alibi_slopes.to(torch.float32)
+        if unpadded:
+            assert cu_seqlens.dtype == torch.int32
+            assert max_seqlen is not None
+            assert isinstance(max_seqlen, int)
+            return flash_attn_varlen_qkvpacked_func(
+                qkv,
+                cu_seqlens,
+                max_seqlen,
+                self.drop.p if self.training else 0.0,
+                softmax_scale=self.softmax_scale,
+                causal=causal,
+                alibi_slopes=self.alibi_slopes,
+                window_size=self.window_size,
+                deterministic=self.deterministic,
+            )
+        else:
+            return flash_attn_qkvpacked_func(
+                qkv,
+                self.drop.p if self.training else 0.0,
+                softmax_scale=self.softmax_scale,
+                causal=causal,
+                alibi_slopes=self.alibi_slopes,
+                window_size=self.window_size,
+                deterministic=self.deterministic,
+            )
+
+
+class FlashCrossAttention(nn.Module):
+    """Implement the scaled dot product attention with softmax.
+    Arguments
+    ---------
+        softmax_scale: The temperature to use for the softmax attention.
+                      (default: 1/sqrt(d_keys) where d_keys is computed at
+                      runtime)
+        attention_dropout: The dropout rate to apply to the attention
+                           (default: 0.0)
+    """
+
+    def __init__(
+        self,
+        causal=False,
+        softmax_scale=None,
+        attention_dropout=0.0,
+        alibi_slopes=None,
+        window_size=(-1, -1),
+        deterministic=False,
+    ):
+        super().__init__()
+        assert flash_attn_varlen_kvpacked_func is not None, "FlashAttention is not installed"
+        assert flash_attn_kvpacked_func is not None, "FlashAttention is not installed"
+        self.causal = causal
+        self.softmax_scale = softmax_scale
+        self.drop = nn.Dropout(attention_dropout)
+        self.register_buffer("alibi_slopes", alibi_slopes, persistent=False)
+        self.window_size = window_size
+        self.deterministic = deterministic
+
+    def forward(
+        self,
+        q,
+        kv,
+        causal=None,
+        cu_seqlens=None,
+        max_seqlen=None,
+        cu_seqlens_k=None,
+        max_seqlen_k=None,
+    ):
+        """Implements the multihead softmax attention.
+        Arguments
+        ---------
+            q: The tensor containing the query. (B, Sq, H, D)
+            kv: The tensor containing the key and value. (B, Sk, 2, H_k, D)
+            causal: if passed, will override self.causal
+            cu_seqlens: (batch_size + 1,), dtype torch.int32. The cumulative sequence lengths
+                of the sequences in the batch, used to index into q.
+            max_seqlen: int. Maximum sequence length in the batch of q.
+            cu_seqlens_k: (batch_size + 1,), dtype torch.int32. The cumulative sequence lengths
+                of the sequences in the batch, used to index into kv.
+            max_seqlen_k: int. Maximum sequence length in the batch of k and v.
+        """
+        assert q.dtype in [torch.float16, torch.bfloat16]
+        assert q.is_cuda and kv.is_cuda
+        causal = self.causal if causal is None else causal
+        unpadded = cu_seqlens is not None
+        if self.alibi_slopes is not None:
+            self.alibi_slopes = self.alibi_slopes.to(torch.float32)
+        if unpadded:
+            assert cu_seqlens.dtype == torch.int32
+            assert max_seqlen is not None
+            assert isinstance(max_seqlen, int)
+            assert cu_seqlens_k is not None
+            assert cu_seqlens_k.dtype == torch.int32
+            assert max_seqlen_k is not None
+            assert isinstance(max_seqlen, int)
+            return flash_attn_varlen_kvpacked_func(
+                q,
+                kv,
+                cu_seqlens,
+                cu_seqlens_k,
+                max_seqlen,
+                max_seqlen_k,
+                self.drop.p if self.training else 0.0,
+                softmax_scale=self.softmax_scale,
+                causal=causal,
+                alibi_slopes=self.alibi_slopes,
+                window_size=self.window_size,
+                deterministic=self.deterministic,
+            )
+        else:
+            batch_size, seqlen_q = q.shape[0], q.shape[1]
+            seqlen_k = kv.shape[1]
+            assert kv.shape[0] == batch_size and kv.shape[4] == q.shape[3]
+            return flash_attn_kvpacked_func(
+                q,
+                kv,
+                self.drop.p if self.training else 0.0,
+                causal=causal,
+                softmax_scale=self.softmax_scale,
+                alibi_slopes=self.alibi_slopes,
+                window_size=self.window_size,
+                deterministic=self.deterministic,
+            )
+
+
+class SelfAttention(nn.Module):
+    """Implement the scaled dot product attention with softmax.
+    Arguments
+    ---------
+        softmax_scale: The temperature to use for the softmax attention.
+                      (default: 1/sqrt(d_keys) where d_keys is computed at
+                      runtime)
+        attention_dropout: The dropout rate to apply to the attention
+                           (default: 0.0)
+    """
+    def __init__(self,
+                 causal=False,
+                 softmax_scale=None,
+                 attention_dropout=0.0,
+                 alibi_slopes=None,
+                 qk_norm_kwargs=None,
+        ):
+        super().__init__()
+        self.causal = causal
+        self.softmax_scale = softmax_scale
+        self.drop = nn.Dropout(attention_dropout)
+        self.register_buffer('alibi_slopes', alibi_slopes, persistent=False)
+        if alibi_slopes is not None:
+            self.register_buffer('linear_biases', self._build_linear_biases(16), persistent=False)
+        else:
+            self.linear_biases = None
+        if qk_norm_kwargs is not None:
+            self.qk_norm = True
+            self.q_layernorm = MultiHeadLayernorm(**qk_norm_kwargs)
+            self.k_layernorm = MultiHeadLayernorm(**qk_norm_kwargs)
+        else:
+            self.qk_norm = False
+            self.q_layernorm = None
+            self.k_layernorm = None
+
+    def _build_linear_biases(self, seqlen):
+        context_position = torch.arange(seqlen, device=self.alibi_slopes.device)[:, None]
+        memory_position = torch.arange(seqlen, device=self.alibi_slopes.device)[None, :]
+        # distance tensor is of shape (seqlen, seqlen)
+        distance = torch.abs(memory_position - context_position)
+        # alibi tensor is of shape (1, H, seqlen, seqlen)
+        linear_biases = (distance[None, ...] * self.alibi_slopes[:, None, None])[None, ...]
+        return linear_biases
+
+    def forward(self, qkv, causal=None, key_padding_mask=None):
+        """Implements the multihead softmax attention.
+        Arguments
+        ---------
+            qkv: The tensor containing the query, key, and value. (B, S, 3, H, D)
+            causal: if passed, will override self.causal
+            key_padding_mask: boolean mask to apply to the attention weights. True means to keep,
+                False means to mask out. (B, S)
+        """
+        batch_size, seqlen = qkv.shape[0], qkv.shape[1]
+        causal = self.causal if causal is None else causal
+        q, k, v = qkv.unbind(dim=2)
+        if self.qk_norm:
+            q = self.q_layernorm(q)
+            k = self.k_layernorm(k)
+        softmax_scale = self.softmax_scale or 1.0 / math.sqrt(q.shape[-1])
+        scores = torch.einsum("bthd,bshd->bhts", q, k * softmax_scale)
+        if key_padding_mask is not None:
+            padding_mask = torch.full(
+                (batch_size, seqlen), -10000.0, dtype=scores.dtype, device=scores.device
+            )
+            padding_mask.masked_fill_(key_padding_mask, 0.0)
+            # TD [2022-09-30]: Adding is faster than masked_fill_ (idk why, just better kernel I guess)
+            scores = scores + rearrange(padding_mask, "b s -> b 1 1 s")
+        if self.alibi_slopes is not None:
+            if seqlen > self.linear_biases.shape[-1]:
+                self.linear_biases = self._build_linear_biases(seqlen)
+            cropped_biases = self.linear_biases[..., :seqlen, :seqlen]
+            scores = scores - cropped_biases
+        if causal:
+            # "triu_tril_cuda_template" not implemented for 'BFloat16'
+            # So we have to construct the mask in float
+            causal_mask = torch.triu(
+                torch.full((seqlen, seqlen), -10000.0, device=scores.device), 1
+            )
+            # TD [2022-09-30]: Adding is faster than masked_fill_ (idk why, just better kernel I guess)
+            scores = scores + causal_mask.to(dtype=scores.dtype)
+        attention = torch.softmax(scores, dim=-1, dtype=v.dtype)
+        attention_drop = self.drop(attention)
+        output = torch.einsum("bhts,bshd->bthd", attention_drop, v)
+        return output
+
+
+class CrossAttention(nn.Module):
+    """Implement the scaled dot product attention with softmax.
+    Arguments
+    ---------
+        softmax_scale: The temperature to use for the softmax attention.
+                      (default: 1/sqrt(d_keys) where d_keys is computed at
+                      runtime)
+        attention_dropout: The dropout rate to apply to the attention
+                           (default: 0.0)
+    """
+
+    def __init__(self, causal=False, softmax_scale=None, attention_dropout=0.0):
+        super().__init__()
+        self.causal = causal
+        self.softmax_scale = softmax_scale
+        self.drop = nn.Dropout(attention_dropout)
+
+    def forward(self, q, kv, causal=None, key_padding_mask=None):
+        """Implements the multihead softmax attention.
+        Arguments
+        ---------
+            q: The tensor containing the query. (B, Sq, H, D)
+            kv: The tensor containing the key and value. (B, Sk, 2, H_k, D)
+            causal: if passed, will override self.causal
+            key_padding_mask: boolean mask to apply to the attention weights. True means to keep,
+                False means to mask out. (B, Sk)
+        """
+        batch_size, seqlen_q = q.shape[0], q.shape[1]
+        causal = self.causal if causal is None else causal
+        seqlen_k = kv.shape[1]
+        assert kv.shape[0] == batch_size and kv.shape[4] == q.shape[3]
+        if kv.shape[3] != q.shape[2]:  # MQA/GQA
+            kv = repeat(kv, "... hkv d -> ... (hkv g) d", g=q.shape[2] // kv.shape[3])
+        k, v = kv.unbind(dim=2)
+        softmax_scale = self.softmax_scale or 1.0 / math.sqrt(q.shape[-1])
+        scores = torch.einsum("bthd,bshd->bhts", q, k * softmax_scale)
+        if key_padding_mask is not None:
+            padding_mask = torch.full(
+                (batch_size, seqlen_k), -10000.0, dtype=scores.dtype, device=scores.device
+            )
+            padding_mask.masked_fill_(key_padding_mask, 0.0)
+            # TD [2022-09-30]: Adding is faster than masked_fill_ (idk why, just better kernel I guess)
+            scores = scores + rearrange(padding_mask, "b s -> b 1 1 s")
+        if causal:
+            # causal mask needs to take into account the difference between seqlen_q and seqlen_k
+            row_idx = rearrange(
+                torch.arange(seqlen_q, device=q.device, dtype=torch.long), "s -> s 1"
+            )
+            col_idx = torch.arange(seqlen_k, device=kv.device, dtype=torch.long)
+            sk = (
+                seqlen_k
+                if key_padding_mask is None
+                else rearrange(key_padding_mask.sum(-1), "b -> b 1 1 1")
+            )
+            causal_mask = col_idx > row_idx + sk - seqlen_q
+            scores = scores.masked_fill(causal_mask, -10000.0)
+        attention = torch.softmax(scores, dim=-1, dtype=v.dtype)
+        attention_drop = self.drop(attention)
+        output = torch.einsum("bhts,bshd->bthd", attention_drop, v)
+        return output
+
+
+class LinearResidual(nn.Linear):
+    """Wrap nn.Linear to return the residual as well. For compatibility with FusedDense."""
+
+    def forward(self, input: torch.Tensor) -> torch.Tensor:
+        return super().forward(input), input
+
+
+def _update_kv_cache(kv, inference_params, layer_idx):
+    """kv: (batch_size, seqlen, 2, nheads, head_dim) or (batch_size, 1, 2, nheads, head_dim)"""
+    # Pre-allocate memory for key-values for inference.
+    num_heads, head_dim = kv.shape[-2:]
+    if layer_idx not in inference_params.key_value_memory_dict:
+        kv_cache = torch.empty(
+            inference_params.max_batch_size,
+            inference_params.max_seqlen,
+            2,
+            num_heads,
+            head_dim,
+            dtype=kv.dtype,
+            device=kv.device,
+        )
+        inference_params.key_value_memory_dict[layer_idx] = kv_cache
+    else:
+        kv_cache = inference_params.key_value_memory_dict[layer_idx]
+    # Adjust key and value for inference
+    batch_start = inference_params.batch_size_offset
+    batch_end = batch_start + kv.shape[0]
+    sequence_start = inference_params.seqlen_offset
+    sequence_end = sequence_start + kv.shape[1]
+    assert batch_end <= kv_cache.shape[0]
+    assert sequence_end <= kv_cache.shape[1]
+    assert kv_cache is not None
+    kv_cache[batch_start:batch_end, sequence_start:sequence_end, ...] = kv
+    return kv_cache[batch_start:batch_end, :sequence_end, ...]
+
+
+class MHA(nn.Module):
+    """Multi-head self-attention and cross-attention"""
+
+    def __init__(
+        self,
+        embed_dim,
+        num_heads,
+        num_heads_kv=None,
+        cross_attn=False,
+        qkv_proj_bias=True,
+        out_proj_bias=True,
+        dropout=0.0,
+        softmax_scale=None,
+        causal=False,
+        layer_idx=None,
+        dwconv=False,
+        rotary_emb_dim=0,
+        rotary_emb_base=10000.0,
+        rotary_emb_scale_base=None,
+        rotary_emb_interleaved=False,
+        use_alibi=False,
+        window_size=(-1, -1),
+        fused_bias_fc=False,
+        use_flash_attn=False,
+        return_residual=False,
+        checkpointing=False,
+        device=None,
+        dtype=None,
+        qk_norm=False,
+        qk_norm_kwargs=None,
+    ) -> None:
+        """
+        num_heads_kv: can be used to toggle MQA / GQA. If None, use num_heads.
+        return_residual: whether to return the input x along with the output. This is for
+            performance reason: for post-norm architecture, returning the input allows us
+            to fuse the backward of nn.Linear with the residual connection.
+        """
+        if qk_norm and cross_attn:
+            raise NotImplementedError('QK normalization is only implemented for self-attention.')
+        if qk_norm:
+            qk_norm_kwargs = qk_norm_kwargs if qk_norm_kwargs is not None else {}
+            qk_norm_kwargs.update({'num_heads': num_heads, 'head_dim': embed_dim  // num_heads})
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        self.embed_dim = embed_dim
+        self.cross_attn = cross_attn
+        self.causal = causal
+        self.layer_idx = layer_idx
+        self.dwconv = dwconv
+        self.rotary_emb_dim = rotary_emb_dim
+        self.use_flash_attn = use_flash_attn
+        self.return_residual = return_residual
+        self.checkpointing = checkpointing
+        if use_alibi:
+            assert not cross_attn or use_flash_attn, "ALiBi code path requires self-attention or cross-attention with flash_attn"
+            alibi_slopes = torch.tensor(get_alibi_slopes(num_heads), device=device)
+        else:
+            alibi_slopes = None
+        if window_size != (-1, -1):
+            assert use_flash_attn, "Local (sliding window) attention code path requires flash_attn"
+
+        self.num_heads = num_heads
+        self.num_heads_kv = num_heads_kv if num_heads_kv is not None else num_heads
+        assert (
+            self.num_heads % self.num_heads_kv == 0
+        ), "num_heads must be divisible by num_heads_kv"
+        assert self.embed_dim % num_heads == 0, "embed_dim must be divisible by num_heads"
+        self.head_dim = self.embed_dim // num_heads
+        qkv_dim = self.head_dim * (self.num_heads + 2 * self.num_heads_kv)
+        kv_dim = 2 * self.head_dim * self.num_heads_kv
+
+        if self.rotary_emb_dim > 0:
+            assert not cross_attn, "MHA with rotary embedding does not support cross-attention yet"
+            assert RotaryEmbedding is not None, "rotary_emb is not installed"
+            self.rotary_emb = RotaryEmbedding(
+                self.rotary_emb_dim,
+                base=rotary_emb_base,
+                scale_base=rotary_emb_scale_base,
+                interleaved=rotary_emb_interleaved,
+                device=device,
+            )
+
+        if fused_bias_fc and FusedDense is None:
+            raise ImportError("fused_dense is not installed")
+        linear_cls = nn.Linear if not fused_bias_fc else FusedDense
+        linear_resid_cls = (
+            LinearResidual if not fused_bias_fc else partial(FusedDense, return_residual=True)
+        )
+        wqkv_cls = linear_cls if not self.return_residual else linear_resid_cls
+        inner_attn_cls = (
+            partial(FlashSelfAttention, alibi_slopes=alibi_slopes, window_size=window_size, qk_norm_kwargs=qk_norm_kwargs)
+            if use_flash_attn
+            else partial(SelfAttention, alibi_slopes=alibi_slopes, qk_norm_kwargs=qk_norm_kwargs)
+        )
+        inner_cross_attn_cls = (
+            partial(FlashCrossAttention, alibi_slopes=alibi_slopes, window_size=window_size)
+            if use_flash_attn
+            else CrossAttention
+        )
+        if not self.cross_attn:
+            self.Wqkv = wqkv_cls(embed_dim, qkv_dim, bias=qkv_proj_bias, **factory_kwargs)
+        else:
+            self.Wq = linear_cls(embed_dim, embed_dim, bias=qkv_proj_bias, **factory_kwargs)
+            self.Wkv = wqkv_cls(embed_dim, kv_dim, bias=qkv_proj_bias, **factory_kwargs)
+        if self.dwconv:
+            if self.num_heads_kv == self.num_heads:
+                self.dwconv_qkv = nn.Conv1d(
+                    qkv_dim, qkv_dim, kernel_size=3, padding=2, groups=qkv_dim
+                )
+            else:
+                self.dwconv_q = nn.Conv1d(
+                    embed_dim, embed_dim, kernel_size=3, padding=2, groups=embed_dim
+                )
+                self.dwconv_kv = nn.Conv1d(kv_dim, kv_dim, kernel_size=3, padding=2, groups=kv_dim)
+        self.inner_attn = inner_attn_cls(
+            causal=causal,
+            softmax_scale=softmax_scale,
+            attention_dropout=dropout,
+        )
+        self.inner_cross_attn = inner_cross_attn_cls(
+            causal=causal, softmax_scale=softmax_scale, attention_dropout=dropout
+        )
+        self.out_proj = linear_cls(embed_dim, embed_dim, bias=out_proj_bias, **factory_kwargs)
+
+    def allocate_inference_cache(self, batch_size, max_seqlen, dtype=None):
+        dtype = self.out_proj.weight.dtype if dtype is None else dtype
+        device = self.out_proj.weight.device
+        return torch.empty(
+            batch_size,
+            max_seqlen,
+            2,
+            self.num_heads_kv,
+            self.head_dim,
+            dtype=dtype,
+            device=device,
+        )
+
+    def _update_kv_cache(self, kv, inference_params):
+        """kv: (batch_size, seqlen, 2, nheads, head_dim) or (batch_size, 1, 2, nheads, head_dim)"""
+        assert not self.dwconv, "Generation does not support dwconv yet"
+        assert self.layer_idx is not None, "Generation requires layer_idx in the constructor"
+        return _update_kv_cache(kv, inference_params, self.layer_idx)
+
+    def _apply_rotary_update_kvcache_attention(self, q, kv, inference_params):
+        """
+        Fast path that combine 3 steps: apply rotary to Q and K, update kv cache, and apply attention.
+        q: (batch_size, seqlen_q, nheads, head_dim)
+        kv: (batch_size, seqlen_k, 2, nheads_kv, head_dim)
+        """
+        assert inference_params is not None and inference_params.seqlen_offset > 0
+        assert self.use_flash_attn
+        if self.rotary_emb_dim > 0:
+            assert self.rotary_emb.scale is None, "This code path does not support xPos"
+            self.rotary_emb._update_cos_sin_cache(
+                inference_params.max_seqlen, device=q.device, dtype=q.dtype
+            )
+            rotary_cos, rotary_sin = self.rotary_emb._cos_cached, self.rotary_emb._sin_cached
+        else:
+            rotary_cos, rotary_sin = None, None
+        batch = q.shape[0]
+        kv_cache = inference_params.key_value_memory_dict[self.layer_idx][:batch]
+        cache_seqlens = (
+            inference_params.lengths_per_sample[:batch]
+            if inference_params.lengths_per_sample is not None
+            else inference_params.seqlen_offset
+        )
+        alibi_slopes = getattr(self.inner_cross_attn, "alibi_slopes", None)
+        context = flash_attn_with_kvcache(
+            q,
+            kv_cache[:, :, 0],
+            kv_cache[:, :, 1],
+            kv[:, :, 0],
+            kv[:, :, 1],
+            rotary_cos=rotary_cos,
+            rotary_sin=rotary_sin,
+            cache_seqlens=cache_seqlens,
+            softmax_scale=self.inner_cross_attn.softmax_scale,
+            causal=self.inner_cross_attn.causal,
+            rotary_interleaved=self.rotary_emb.interleaved if self.rotary_emb_dim > 0 else False,
+            alibi_slopes=alibi_slopes,
+        )
+        return context
+
+    def _update_kvcache_attention(self, q, kv, inference_params):
+        """Write kv to inference_params, then do attention"""
+        if (
+            inference_params.seqlen_offset == 0
+            or flash_attn_with_kvcache is None
+            or not self.use_flash_attn
+        ):
+            # TODO: this only uses seqlen_offset and not lengths_per_sample.
+            kv = self._update_kv_cache(kv, inference_params)
+            return self.inner_cross_attn(q, kv)
+        else:
+            batch = q.shape[0]
+            kv_cache = inference_params.key_value_memory_dict[self.layer_idx][:batch]
+            cache_seqlens = (
+                inference_params.lengths_per_sample[:batch]
+                if inference_params.lengths_per_sample is not None
+                else inference_params.seqlen_offset
+            )
+            alibi_slopes = getattr(self.inner_cross_attn, "alibi_slopes", None)
+            return flash_attn_with_kvcache(
+                q,
+                kv_cache[:, :, 0],
+                kv_cache[:, :, 1],
+                kv[:, :, 0],
+                kv[:, :, 1],
+                cache_seqlens=cache_seqlens,
+                softmax_scale=self.inner_cross_attn.softmax_scale,
+                causal=self.inner_cross_attn.causal,
+                alibi_slopes=alibi_slopes,
+            )
+
+    def forward(
+        self,
+        x,
+        x_kv=None,
+        key_padding_mask=None,
+        cu_seqlens=None,
+        max_seqlen=None,
+        mixer_subset=None,
+        inference_params=None,
+        **kwargs,
+    ):
+        """
+        Arguments:
+            x: (batch, seqlen, hidden_dim) (where hidden_dim = num heads * head dim) if
+                cu_seqlens is None and max_seqlen is None, else (total, hidden_dim) where total
+                is the is the sum of the sequence lengths in the batch.
+            x_kv: (batch, seqlen, hidden_dim), only applicable for cross-attention. If None, use x.
+            cu_seqlens: (batch_size + 1,), dtype torch.int32. The cumulative sequence lengths
+                of the sequences in the batch, used to index into x. Only applicable when using
+                FlashAttention.
+            max_seqlen: int. Maximum sequence length in the batch.
+            key_padding_mask: boolean mask, True means to keep, False means to mask out.
+                (batch, seqlen). Only applicable when not using FlashAttention.
+            mixer_subset: for cross-attention only. If not None, will take a subset of x
+                before applying the query projection. Useful for e.g., ViT where we only care
+                about the CLS token in the last layer.
+            inference_params: for generation. Adapted from Megatron-LM (and Apex)
+            https://github.com/NVIDIA/apex/blob/3ff1a10f72ec07067c4e44759442329804ac5162/apex/transformer/testing/standalone_transformer_lm.py#L470
+        """
+        if cu_seqlens is not None:
+            assert max_seqlen is not None
+            assert key_padding_mask is None
+            assert self.use_flash_attn
+            assert not self.dwconv
+            assert self.rotary_emb_dim == 0
+        if key_padding_mask is not None:
+            assert cu_seqlens is None
+            assert max_seqlen is None
+            assert not self.use_flash_attn
+        if inference_params is not None:
+            assert key_padding_mask is None
+            assert cu_seqlens is None and max_seqlen is None
+            assert not self.dwconv
+
+        kwargs = (
+            {"cu_seqlens": cu_seqlens, "max_seqlen": max_seqlen, **kwargs}
+            if self.use_flash_attn
+            else {"key_padding_mask": key_padding_mask, **kwargs}
+        )
+        seqlen_offset = (
+            0
+            if inference_params is None
+            else (
+                inference_params.lengths_per_sample
+                if inference_params.lengths_per_sample is not None
+                else inference_params.seqlen_offset
+            )
+        )
+        rotary_max_seqlen = inference_params.max_seqlen if inference_params is not None else None
+        batch, seqlen = x.shape[:2]
+        if not self.cross_attn and self.num_heads_kv == self.num_heads:
+            assert x_kv is None and mixer_subset is None
+            if not self.return_residual:
+                qkv = self.Wqkv(x)
+            else:
+                qkv, x = self.Wqkv(x)
+            if self.dwconv:
+                qkv = rearrange(
+                    self.dwconv_qkv(rearrange(qkv, "b s d -> b d s"))[..., :-2], "b d s -> b s d"
+                ).contiguous()
+            qkv = rearrange(qkv, "... (three h d) -> ... three h d", three=3, d=self.head_dim)
+            if (
+                inference_params is None
+                or inference_params.seqlen_offset == 0
+                or (self.rotary_emb_dim == 0 or self.rotary_emb_dim % 16 != 0)
+                or not self.use_flash_attn
+            ):
+                if self.rotary_emb_dim > 0:
+                    qkv = self.rotary_emb(
+                        qkv, seqlen_offset=seqlen_offset, max_seqlen=rotary_max_seqlen
+                    )
+                if inference_params is None:
+                    if not self.checkpointing:
+                        context = self.inner_attn(qkv, **kwargs)
+                    else:
+                        context = torch.utils.checkpoint.checkpoint(self.inner_attn, qkv, use_reentrant=False, **kwargs)
+                else:
+                    context = self._update_kvcache_attention(
+                        qkv[:, :, 0], qkv[:, :, 1:], inference_params
+                    )
+            else:
+                context = self._apply_rotary_update_kvcache_attention(
+                    qkv[:, :, 0], qkv[:, :, 1:], inference_params
+                )
+        else:
+            if self.cross_attn:
+                if not self.return_residual:
+                    q = self.Wq(x if mixer_subset is None else x[:, mixer_subset])
+                    kv = self.Wkv(x_kv if x_kv is not None else x)
+                else:
+                    if x_kv is not None:
+                        kv, x_kv = self.Wkv(x_kv)
+                    else:
+                        kv, x = self.Wkv(x)
+                    q = self.Wq(x if mixer_subset is None else x[:, mixer_subset])
+            else:
+                assert self.num_heads_kv != self.num_heads
+                if not self.return_residual:
+                    qkv = self.Wqkv(x)
+                else:
+                    qkv, x = self.Wqkv(x)
+                q = qkv[..., : self.num_heads * self.head_dim]
+                kv = qkv[..., self.num_heads * self.head_dim :]
+            q = rearrange(q, "... (h d) -> ... h d", d=self.head_dim)
+            kv = rearrange(kv, "... (two hkv d) -> ... two hkv d", two=2, d=self.head_dim)
+            if self.dwconv:
+                q = rearrange(
+                    self.dwconv_q(rearrange(q, "b s d -> b d s"))[..., :-2], "b d s -> b s d"
+                ).contiguous()
+                kv = rearrange(
+                    self.dwconv_kv(rearrange(kv, "b s d -> b d s"))[..., :-2], "b d s -> b s d"
+                ).contiguous()
+            if (
+                inference_params is None
+                or inference_params.seqlen_offset == 0
+                or (self.rotary_emb_dim == 0 or self.rotary_emb_dim % 16 != 0)
+                or not self.use_flash_attn
+            ):
+                if self.rotary_emb_dim > 0:
+                    q, kv = self.rotary_emb(
+                        q, kv, seqlen_offset=seqlen_offset, max_seqlen=rotary_max_seqlen
+                    )
+                if inference_params is None:
+                    if not self.checkpointing:
+                        context = self.inner_cross_attn(q, kv, **kwargs)
+                    else:
+                        context = torch.utils.checkpoint.checkpoint(
+                            self.inner_cross_attn, q, kv, use_reentrant=False, **kwargs
+                        )
+                else:
+                    context = self._update_kvcache_attention(q, kv, inference_params)
+            else:
+                context = self._apply_rotary_update_kvcache_attention(q, kv, inference_params)
+        out = self.out_proj(rearrange(context, "... h d -> ... (h d)"))
+        return out if not self.return_residual else (out, x)

mlp.py

@@ -0,0 +1,196 @@
+# Copyright (c) 2023, Tri Dao.
+
+""""
+The implementation was adopted from
+https://github.com/Dao-AILab/flash-attention/blob/43950dda456e095969d842fca7a73c5bfe3cecd0
+"""
+
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+from torch.distributed import ProcessGroup
+
+
+try:
+    from flash_attn.ops.activations import swiglu
+except ImportError:
+    swiglu = None
+
+try:
+    from flash_attn.ops.fused_dense import ColumnParallelLinear, RowParallelLinear
+except ImportError:
+    ColumnParallelLinear, RowParallelLinear = None, None
+
+try:
+    from flash_attn.ops.fused_dense import FusedMLP, ParallelFusedMLP
+except ImportError:
+    FusedMLP, ParallelFusedMLP = None, None
+
+
+class Mlp(nn.Module):
+    def __init__(
+        self,
+        in_features,
+        hidden_features=None,
+        out_features=None,
+        activation=F.gelu,
+        bias1=True,
+        bias2=True,
+        return_residual=False,
+        device=None,
+        dtype=None,
+    ):
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        out_features = out_features if out_features is not None else in_features
+        hidden_features = hidden_features if hidden_features is not None else in_features * 4
+        self.return_residual = return_residual
+        self.fc1 = nn.Linear(in_features, hidden_features, bias=bias1, **factory_kwargs)
+        self.activation = activation
+        self.fc2 = nn.Linear(hidden_features, out_features, bias=bias2, **factory_kwargs)
+
+    def forward(self, x):
+        y = self.fc1(x)
+        y = self.activation(y)
+        y = self.fc2(y)
+        return y if not self.return_residual else (y, x)
+
+
+class ParallelMLP(nn.Module):
+    def __init__(
+        self,
+        in_features,
+        hidden_features=None,
+        out_features=None,
+        activation=F.gelu,
+        process_group: ProcessGroup = None,
+        sequence_parallel=True,
+        bias1=True,
+        bias2=True,
+        device=None,
+        dtype=None,
+    ):
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        assert ColumnParallelLinear is not None, "Need to install fused_dense"
+        assert RowParallelLinear is not None, "Need to install fused_dense"
+        out_features = out_features if out_features is not None else in_features
+        hidden_features = hidden_features if hidden_features is not None else in_features * 4
+        self.fc1 = ColumnParallelLinear(
+            in_features,
+            hidden_features,
+            process_group,
+            bias=bias1,
+            sequence_parallel=sequence_parallel,
+            **factory_kwargs,
+        )
+        self.activation = activation
+        self.fc2 = RowParallelLinear(
+            hidden_features,
+            out_features,
+            process_group,
+            bias=bias2,
+            sequence_parallel=sequence_parallel,
+            **factory_kwargs,
+        )
+
+    def forward(self, x):
+        y = self.fc1(x)
+        y = self.activation(y)
+        y = self.fc2(y)
+        return y
+
+
+class GatedMlp(nn.Module):
+    def __init__(
+        self,
+        in_features,
+        hidden_features=None,
+        out_features=None,
+        activation=F.sigmoid,
+        bias1=True,
+        bias2=True,
+        multiple_of=128,
+        return_residual=False,
+        device=None,
+        dtype=None,
+    ):
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        out_features = out_features if out_features is not None else in_features
+        hidden_features = (
+            hidden_features if hidden_features is not None else int(8 * in_features / 3)
+        )
+        hidden_features = (hidden_features + multiple_of - 1) // multiple_of * multiple_of
+        self.return_residual = return_residual
+        self.fc1 = nn.Linear(in_features, 2 * hidden_features, bias=bias1, **factory_kwargs)
+        self.activation = activation
+        self.fc2 = nn.Linear(hidden_features, out_features, bias=bias2, **factory_kwargs)
+
+    def forward(self, x):
+        y = self.fc1(x)
+        if self.activation == F.sigmoid:  # Special case for GLU
+            y = F.glu(y, dim=-1)
+        elif self.activation == F.silu and swiglu is not None:  # Special case for SwiGLU
+            y, gate = y.chunk(2, dim=-1)
+            y = swiglu(gate, y)
+        else:
+            y, gate = y.chunk(2, dim=-1)
+            y = y * self.activation(gate)
+        y = self.fc2(y)
+        return y if not self.return_residual else (y, x)
+
+
+class ParallelGatedMlp(nn.Module):
+    """Parallel GatedMlp"""
+
+    def __init__(
+        self,
+        in_features,
+        process_group,
+        hidden_features=None,
+        out_features=None,
+        activation=F.sigmoid,
+        bias1=True,
+        bias2=True,
+        multiple_of=128,
+        sequence_parallel=True,
+        device=None,
+        dtype=None,
+    ):
+        factory_kwargs = {"device": device, "dtype": dtype}
+        super().__init__()
+        out_features = out_features if out_features is not None else in_features
+        hidden_features = (
+            hidden_features if hidden_features is not None else int(8 * in_features / 3)
+        )
+        hidden_features = (hidden_features + multiple_of - 1) // multiple_of * multiple_of
+        if ColumnParallelLinear is None or RowParallelLinear is None:
+            raise ImportError("fused_dense is not installed")
+        self.fc1 = ColumnParallelLinear(
+            in_features,
+            2 * hidden_features,
+            process_group,
+            bias=bias1,
+            sequence_parallel=sequence_parallel,
+            **factory_kwargs,
+        )
+        self.activation = activation
+        self.fc2 = RowParallelLinear(
+            hidden_features,
+            out_features,
+            process_group,
+            bias=bias2,
+            sequence_parallel=sequence_parallel,
+            **factory_kwargs,
+        )
+
+    def forward(self, x):
+        y = self.fc1(x)
+        if self.activation == F.sigmoid:  # Special case for GLU
+            y = F.glu(y, dim=-1)
+        else:
+            y, gate = y.chunk(2, dim=-1)
+            y = y * self.activation(gate)
+        y = self.fc2(y)
+        return y

modeling_bert.py

@@ -29,17 +29,17 @@ from transformers.models.bert.modeling_bert import (
     BaseModelOutputWithPoolingAndCrossAttentions,
     BertForPreTrainingOutput,
 )
-from flash_attn.bert_padding import (
+from .bert_padding import (
     index_first_axis,
     index_first_axis_residual,
     pad_input,
     unpad_input,
 )
 
-from flash_attn.modules.block import Block
-from flash_attn.modules.embedding import BertEmbeddings
-from flash_attn.modules.mha import MHA
-from flash_attn.modules.mlp import FusedMLP, Mlp
+from .block import Block
+from .embedding import BertEmbeddings
+from .mha import MHA
+from .mlp import FusedMLP, Mlp
 
 try:
     from flash_attn.ops.fused_dense import FusedDense
@@ -184,7 +184,7 @@ class BertEncoder(nn.Module):
         """
         if key_padding_mask is None or not self.use_flash_attn:
             mixer_kwargs = (
-                {"key_padding_mask": key_padding_mask} if key_padding_mask is not None else None
+                {"key_padding_mask": key_padding_mask.bool()} if key_padding_mask is not None else None
             )
             for layer in self.layers:
                 hidden_states = layer(hidden_states, mixer_kwargs=mixer_kwargs)

modeling_for_glue.py

@@ -0,0 +1,264 @@
+from typing import Optional, Union, Tuple
+
+import torch
+from torch import nn
+from torch.nn import CrossEntropyLoss, MSELoss, BCEWithLogitsLoss
+from transformers.modeling_outputs import SequenceClassifierOutput, QuestionAnsweringModelOutput, TokenClassifierOutput
+
+from .modeling_bert import BertPreTrainedModel, BertModel
+from .configuration_bert import JinaBertConfig
+
+
+class BertForSequenceClassification(BertPreTrainedModel):
+    def __init__(self, config: JinaBertConfig):
+        super().__init__(config)
+        self.num_labels = config.num_labels
+        self.config = config
+
+        self.bert = BertModel(config)
+        classifier_dropout = (
+            config.classifier_dropout
+            if config.classifier_dropout is not None
+            else config.hidden_dropout_prob
+        )
+        self.dropout = nn.Dropout(classifier_dropout)
+        self.classifier = nn.Linear(config.hidden_size, config.num_labels)
+
+        # Initialize weights and apply final processing
+        self.post_init()
+
+
+    def forward(
+        self,
+        input_ids: Optional[torch.Tensor] = None,
+        attention_mask: Optional[torch.Tensor] = None,
+        token_type_ids: Optional[torch.Tensor] = None,
+        position_ids: Optional[torch.Tensor] = None,
+        head_mask: Optional[torch.Tensor] = None,
+        inputs_embeds: Optional[torch.Tensor] = None,
+        labels: Optional[torch.Tensor] = None,
+        output_attentions: Optional[bool] = None,
+        output_hidden_states: Optional[bool] = None,
+        return_dict: Optional[bool] = None,
+    ) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
+        r"""
+        labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
+            Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
+            config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
+            `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
+        """
+        return_dict = (
+            return_dict if return_dict is not None else self.config.use_return_dict
+        )
+
+        outputs = self.bert(
+            input_ids,
+            attention_mask=attention_mask,
+            token_type_ids=token_type_ids,
+            position_ids=position_ids,
+            head_mask=head_mask,
+            inputs_embeds=inputs_embeds,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            return_dict=return_dict,
+        )
+
+        pooled_output = outputs[1]
+
+        pooled_output = self.dropout(pooled_output)
+        logits = self.classifier(pooled_output)
+
+        loss = None
+        if labels is not None:
+            if self.config.problem_type is None:
+                if self.num_labels == 1:
+                    self.config.problem_type = "regression"
+                elif self.num_labels > 1 and (
+                    labels.dtype == torch.long or labels.dtype == torch.int
+                ):
+                    self.config.problem_type = "single_label_classification"
+                else:
+                    self.config.problem_type = "multi_label_classification"
+
+            if self.config.problem_type == "regression":
+                loss_fct = MSELoss()
+                if self.num_labels == 1:
+                    loss = loss_fct(logits.squeeze(), labels.squeeze())
+                else:
+                    loss = loss_fct(logits, labels)
+            elif self.config.problem_type == "single_label_classification":
+                loss_fct = CrossEntropyLoss()
+                loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
+            elif self.config.problem_type == "multi_label_classification":
+                loss_fct = BCEWithLogitsLoss()
+                loss = loss_fct(logits, labels)
+        if not return_dict:
+            output = (logits,) + outputs[2:]
+            return ((loss,) + output) if loss is not None else output
+
+        return SequenceClassifierOutput(
+            loss=loss,
+            logits=logits,
+            hidden_states=outputs.hidden_states,
+            attentions=outputs.attentions,
+        )
+
+
+class BertForQuestionAnswering(BertPreTrainedModel):
+    def __init__(self, config: JinaBertConfig):
+        super().__init__(config)
+        self.num_labels = config.num_labels
+
+        self.bert = BertModel(config, add_pooling_layer=False)
+        self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
+
+        # Initialize weights and apply final processing
+        self.post_init()
+
+    def forward(
+        self,
+        input_ids: Optional[torch.Tensor] = None,
+        attention_mask: Optional[torch.Tensor] = None,
+        token_type_ids: Optional[torch.Tensor] = None,
+        position_ids: Optional[torch.Tensor] = None,
+        head_mask: Optional[torch.Tensor] = None,
+        inputs_embeds: Optional[torch.Tensor] = None,
+        start_positions: Optional[torch.Tensor] = None,
+        end_positions: Optional[torch.Tensor] = None,
+        output_attentions: Optional[bool] = None,
+        output_hidden_states: Optional[bool] = None,
+        return_dict: Optional[bool] = None,
+    ) -> Union[Tuple[torch.Tensor], QuestionAnsweringModelOutput]:
+        r"""
+        start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
+            Labels for position (index) of the start of the labelled span for computing the token classification loss.
+            Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
+            are not taken into account for computing the loss.
+        end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
+            Labels for position (index) of the end of the labelled span for computing the token classification loss.
+            Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
+            are not taken into account for computing the loss.
+        """
+        return_dict = (
+            return_dict if return_dict is not None else self.config.use_return_dict
+        )
+
+        outputs = self.bert(
+            input_ids,
+            attention_mask=attention_mask,
+            token_type_ids=token_type_ids,
+            position_ids=position_ids,
+            head_mask=head_mask,
+            inputs_embeds=inputs_embeds,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            return_dict=return_dict,
+        )
+
+        sequence_output = outputs[0]
+
+        logits = self.qa_outputs(sequence_output)
+        start_logits, end_logits = logits.split(1, dim=-1)
+        start_logits = start_logits.squeeze(-1).contiguous()
+        end_logits = end_logits.squeeze(-1).contiguous()
+
+        total_loss = None
+        if start_positions is not None and end_positions is not None:
+            # If we are on multi-GPU, split add a dimension
+            if len(start_positions.size()) > 1:
+                start_positions = start_positions.squeeze(-1)
+            if len(end_positions.size()) > 1:
+                end_positions = end_positions.squeeze(-1)
+            # sometimes the start/end positions are outside our model inputs, we ignore these terms
+            ignored_index = start_logits.size(1)
+            start_positions = start_positions.clamp(0, ignored_index)
+            end_positions = end_positions.clamp(0, ignored_index)
+
+            loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
+            start_loss = loss_fct(start_logits, start_positions)
+            end_loss = loss_fct(end_logits, end_positions)
+            total_loss = (start_loss + end_loss) / 2
+
+        if not return_dict:
+            output = (start_logits, end_logits) + outputs[2:]
+            return ((total_loss,) + output) if total_loss is not None else output
+
+        return QuestionAnsweringModelOutput(
+            loss=total_loss,
+            start_logits=start_logits,
+            end_logits=end_logits,
+            hidden_states=outputs.hidden_states,
+            attentions=outputs.attentions,
+        )
+
+
+class BertForTokenClassification(BertPreTrainedModel):
+    def __init__(self, config: JinaBertConfig):
+        super().__init__(config)
+        self.num_labels = config.num_labels
+
+        self.bert = BertModel(config, add_pooling_layer=False)
+        classifier_dropout = (
+            config.classifier_dropout
+            if config.classifier_dropout is not None
+            else config.hidden_dropout_prob
+        )
+        self.dropout = nn.Dropout(classifier_dropout)
+        self.classifier = nn.Linear(config.hidden_size, config.num_labels)
+
+        # Initialize weights and apply final processing
+        self.post_init()
+
+    def forward(
+        self,
+        input_ids: Optional[torch.Tensor] = None,
+        attention_mask: Optional[torch.Tensor] = None,
+        token_type_ids: Optional[torch.Tensor] = None,
+        position_ids: Optional[torch.Tensor] = None,
+        head_mask: Optional[torch.Tensor] = None,
+        inputs_embeds: Optional[torch.Tensor] = None,
+        labels: Optional[torch.Tensor] = None,
+        output_attentions: Optional[bool] = None,
+        output_hidden_states: Optional[bool] = None,
+        return_dict: Optional[bool] = None,
+    ) -> Union[Tuple[torch.Tensor], TokenClassifierOutput]:
+        r"""
+        labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
+            Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
+        """
+        return_dict = (
+            return_dict if return_dict is not None else self.config.use_return_dict
+        )
+
+        outputs = self.bert(
+            input_ids,
+            attention_mask=attention_mask,
+            token_type_ids=token_type_ids,
+            position_ids=position_ids,
+            head_mask=head_mask,
+            inputs_embeds=inputs_embeds,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            return_dict=return_dict,
+        )
+
+        sequence_output = outputs[0]
+
+        sequence_output = self.dropout(sequence_output)
+        logits = self.classifier(sequence_output)
+
+        loss = None
+        if labels is not None:
+            loss_fct = CrossEntropyLoss()
+            loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
+
+        if not return_dict:
+            output = (logits,) + outputs[2:]
+            return ((loss,) + output) if loss is not None else output
+
+        return TokenClassifierOutput(
+            loss=loss,
+            logits=logits,
+            hidden_states=outputs.hidden_states,
+            attentions=outputs.attentions,
+        )

small_config.json

@@ -1,30 +0,0 @@
-{
-  "_name_or_path": "jinaai/jina-bert-flash-implementation",
-  "auto_map": {
-    "AutoConfig": "jinaai/jina-bert-flash-implementation--configuration_bert.JinaBertConfig",
-    "AutoModel": "jinaai/jina-bert-flash-implementation--modeling_bert.BertModel",
-    "AutoModelForPreTraining": "jinaai/jina-bert-flash-implementation--modeling_bert.BertForPreTraining",
-    "AutoModelForMaskedLM": "jinaai/jina-bert-flash-implementation--modeling_bert.BertForPreTraining"
-  },
-  "vocab_size": 30528,
-  "hidden_size": 512,
-  "num_hidden_layers": 4,
-  "num_attention_heads": 8,
-  "intermediate_size": 2048,
-  "hidden_act": "gelu",
-  "hidden_dropout_prob": 0.1,
-  "attention_probs_dropout_prob": 0.1,
-  "type_vocab_size": 0,
-  "initializer_range": 0.02,
-  "layer_norm_eps": 1e-12,
-  "pad_token_id": 0,
-  "dense_seq_output": true,
-  "fused_mlp": false,
-  "mlp_checkpoint_lvl": 0,
-  "last_layer_subset": false,
-  "fused_dropout_add_ln": false,
-  "fused_bias_fc": false,
-  "pad_vocab_size_multiple": 1,
-  "num_tasks": 6,
-  "use_flash_attn": true
-}