Add model files

LICENSE

@@ -0,0 +1,201 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
+      source, and configuration files.
+
+      "Object" form shall mean any form resulting from mechanical
+      transformation or translation of a Source form, including but
+      not limited to compiled object code, generated documentation,
+      and conversions to other media types.
+
+      "Work" shall mean the work of authorship, whether in Source or
+      Object form, made available under the License, as indicated by a
+      copyright notice that is included in or attached to the work
+      (an example is provided in the Appendix below).
+
+      "Derivative Works" shall mean any work, whether in Source or Object
+      form, that is based on (or derived from) the Work and for which the
+      editorial revisions, annotations, elaborations, or other modifications
+      represent, as a whole, an original work of authorship. For the purposes
+      of this License, Derivative Works shall not include works that remain
+      separable from, or merely link (or bind by name) to the interfaces of,
+      the Work and Derivative Works thereof.
+
+      "Contribution" shall mean any work of authorship, including
+      the original version of the Work and any modifications or additions
+      to that Work or Derivative Works thereof, that is intentionally
+      submitted to Licensor for inclusion in the Work by the copyright owner
+      or by an individual or Legal Entity authorized to submit on behalf of
+      the copyright owner. For the purposes of this definition, "submitted"
+      means any form of electronic, verbal, or written communication sent
+      to the Licensor or its representatives, including but not limited to
+      communication on electronic mailing lists, source code control systems,
+      and issue tracking systems that are managed by, or on behalf of, the
+      Licensor for the purpose of discussing and improving the Work, but
+      excluding communication that is conspicuously marked or otherwise
+      designated in writing by the copyright owner as "Not a Contribution."
+
+      "Contributor" shall mean Licensor and any individual or Legal Entity
+      on behalf of whom a Contribution has been received by Licensor and
+      subsequently incorporated within the Work.
+
+   2. Grant of Copyright License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      copyright license to reproduce, prepare Derivative Works of,
+      publicly display, publicly perform, sublicense, and distribute the
+      Work and such Derivative Works in Source or Object form.
+
+   3. Grant of Patent License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      (except as stated in this section) patent license to make, have made,
+      use, offer to sell, sell, import, and otherwise transfer the Work,
+      where such license applies only to those patent claims licensable
+      by such Contributor that are necessarily infringed by their
+      Contribution(s) alone or by combination of their Contribution(s)
+      with the Work to which such Contribution(s) was submitted. If You
+      institute patent litigation against any entity (including a
+      cross-claim or counterclaim in a lawsuit) alleging that the Work
+      or a Contribution incorporated within the Work constitutes direct
+      or contributory patent infringement, then any patent licenses
+      granted to You under this License for that Work shall terminate
+      as of the date such litigation is filed.
+
+   4. Redistribution. You may reproduce and distribute copies of the
+      Work or Derivative Works thereof in any medium, with or without
+      modifications, and in Source or Object form, provided that You
+      meet the following conditions:
+
+      (a) You must give any other recipients of the Work or
+          Derivative Works a copy of this License; and
+
+      (b) You must cause any modified files to carry prominent notices
+          stating that You changed the files; and
+
+      (c) You must retain, in the Source form of any Derivative Works
+          that You distribute, all copyright, patent, trademark, and
+          attribution notices from the Source form of the Work,
+          excluding those notices that do not pertain to any part of
+          the Derivative Works; and
+
+      (d) If the Work includes a "NOTICE" text file as part of its
+          distribution, then any Derivative Works that You distribute must
+          include a readable copy of the attribution notices contained
+          within such NOTICE file, excluding those notices that do not
+          pertain to any part of the Derivative Works, in at least one
+          of the following places: within a NOTICE text file distributed
+          as part of the Derivative Works; within the Source form or
+          documentation, if provided along with the Derivative Works; or,
+          within a display generated by the Derivative Works, if and
+          wherever such third-party notices normally appear. The contents
+          of the NOTICE file are for informational purposes only and
+          do not modify the License. You may add Your own attribution
+          notices within Derivative Works that You distribute, alongside
+          or as an addendum to the NOTICE text from the Work, provided
+          that such additional attribution notices cannot be construed
+          as modifying the License.
+
+      You may add Your own copyright statement to Your modifications and
+      may provide additional or different license terms and conditions
+      for use, reproduction, or distribution of Your modifications, or
+      for any such Derivative Works as a whole, provided Your use,
+      reproduction, and distribution of the Work otherwise complies with
+      the conditions stated in this License.
+
+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
+      by You to the Licensor shall be under the terms and conditions of
+      this License, without any additional terms or conditions.
+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
+      with Licensor regarding such Contributions.
+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
+      except as required for reasonable and customary use in describing the
+      origin of the Work and reproducing the content of the NOTICE file.
+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
+      WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+      implied, including, without limitation, any warranties or conditions
+      of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+      PARTICULAR PURPOSE. You are solely responsible for determining the
+      appropriateness of using or redistributing the Work and assume any
+      risks associated with Your exercise of permissions under this License.
+
+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
+      and charge a fee for, acceptance of support, warranty, indemnity,
+      or other liability obligations and/or rights consistent with this
+      License. However, in accepting such obligations, You may act only
+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
+      of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
+      replaced with your own identifying information. (Don't include
+      the brackets!)  The text should be enclosed in the appropriate
+      comment syntax for the file format. We also recommend that a
+      file or class name and description of purpose be included on the
+      same "printed page" as the copyright notice for easier
+      identification within third-party archives.
+
+   Copyright [yyyy] [name of copyright owner]
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.

README.md

@@ -1,3 +1,4 @@
----
-license: apache-2.0
----
+# redress-clinical-hallucination-generator
+HuggingFace model weights for Clinical Text Hallucination Generator
+
+[Paper Link](https://arxiv.org/abs/2204.10290#:~:text=In%20many%20real%2Dworld%20scenarios,shown%20to%20reduce%20model%20hallucinations.)

added_tokens.json

@@ -0,0 +1 @@
+{"<ent-remove-10>": 50277, "<span-remove-7>": 50296, "<ent-remove-6>": 50273, "<span-remove-10>": 50299, "<ent-remove-5>": 50272, "<ent-remove-8>": 50275, "</dx>": 50314, "<ent-add-2>": 50280, "<shuffle-2>": 50302, "<shuffle-7>": 50307, "</test>": 50316, "<test>": 50315, "<ent-add-3>": 50281, "</treatment>": 50318, "<dx>": 50313, "<shuffle-5>": 50305, "<ent-remove-2>": 50269, "<span-remove-4>": 50293, "<ent-add-10>": 50288, "<shuffle-0>": 50300, "<ent-add-6>": 50284, "<shuffle-10>": 50310, "<ent-remove-9>": 50276, "<ent-add-0>": 50278, "<sep>": 50266, "<span-remove-5>": 50294, "<ent-add-5>": 50283, "<shuffle-6>": 50306, "<ent-remove-0>": 50267, "<ent-add-4>": 50282, "<span-remove-6>": 50295, "<ent-remove-7>": 50274, "<span-remove-1>": 50290, "<ent-sep>": 50265, "<treatment>": 50317, "<shuffle-8>": 50308, "<ent-add-8>": 50286, "<span-remove-8>": 50297, "<shuffle-3>": 50303, "<span-remove-2>": 50291, "<span-remove-3>": 50292, "<shuffle-4>": 50304, "<ent-remove-1>": 50268, "<procedure>": 50311, "<shuffle-1>": 50301, "<ent-remove-3>": 50270, "<ent-add-9>": 50287, "</med>": 50320, "</procedure>": 50312, "<ent-add-7>": 50285, "<shuffle-9>": 50309, "<ent-remove-4>": 50271, "<med>": 50319, "<span-remove-9>": 50298, "<ent-add-1>": 50279, "<span-remove-0>": 50289}

config.json

@@ -0,0 +1,74 @@
+{
+  "_name_or_path": "facebook/bart-base",
+  "activation_dropout": 0.1,
+  "activation_function": "gelu",
+  "add_bias_logits": false,
+  "add_final_layer_norm": false,
+  "architectures": [
+    "BartForConditionalGeneration"
+  ],
+  "attention_dropout": 0.1,
+  "bos_token_id": 0,
+  "classif_dropout": 0.1,
+  "classifier_dropout": 0.0,
+  "d_model": 768,
+  "decoder_attention_heads": 12,
+  "decoder_ffn_dim": 3072,
+  "decoder_layerdrop": 0.0,
+  "decoder_layers": 6,
+  "decoder_start_token_id": 2,
+  "dropout": 0.1,
+  "early_stopping": true,
+  "encoder_attention_heads": 12,
+  "encoder_ffn_dim": 3072,
+  "encoder_layerdrop": 0.0,
+  "encoder_layers": 6,
+  "eos_token_id": 2,
+  "forced_eos_token_id": 2,
+  "gradient_checkpointing": false,
+  "id2label": {
+    "0": "LABEL_0",
+    "1": "LABEL_1",
+    "2": "LABEL_2"
+  },
+  "init_std": 0.02,
+  "is_encoder_decoder": true,
+  "label2id": {
+    "LABEL_0": 0,
+    "LABEL_1": 1,
+    "LABEL_2": 2
+  },
+  "max_position_embeddings": 1024,
+  "model_type": "bart",
+  "no_repeat_ngram_size": 3,
+  "normalize_before": false,
+  "normalize_embedding": true,
+  "num_beams": 4,
+  "num_hidden_layers": 6,
+  "pad_token_id": 1,
+  "scale_embedding": false,
+  "task_specific_params": {
+    "summarization": {
+      "length_penalty": 1.0,
+      "max_length": 128,
+      "min_length": 12,
+      "num_beams": 4
+    },
+    "summarization_cnn": {
+      "length_penalty": 2.0,
+      "max_length": 142,
+      "min_length": 56,
+      "num_beams": 4
+    },
+    "summarization_xsum": {
+      "length_penalty": 1.0,
+      "max_length": 62,
+      "min_length": 11,
+      "num_beams": 6
+    }
+  },
+  "torch_dtype": "float32",
+  "transformers_version": "4.8.2",
+  "use_cache": true,
+  "vocab_size": 50321
+}

optimizer.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:562982efeef44d8f71d19ba2e5655ee768f9642d5246eef67a5afd06667aba12
+size 1115870501

pytorch_model.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:48e231e91bfa7703aca68b207a57a139d21ebe9c1c4ccba36aaaa1db25ff1a94
+size 558157971

rng_state.pth

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fe5ffcd868c940b6d1ad41d593385d4d9ce6a7d8aef663b4505910e3434085cd
+size 14657

scaler.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:77537d1c48266aa2491c2ca6e63fff80dd3ea7ecc2cfb4db9ed865b8f6155cac
+size 559

scheduler.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0f303c797c4bb05ca04f6a6303802199c83b0864549ee5072c385861f8e9d906
+size 623

special_tokens_map.json

@@ -0,0 +1 @@
+{"bos_token": "<s>", "eos_token": "</s>", "unk_token": "<unk>", "sep_token": "</s>", "pad_token": "<pad>", "cls_token": "<s>", "mask_token": {"content": "<mask>", "single_word": false, "lstrip": true, "rstrip": false, "normalized": false}, "additional_special_tokens": ["<ent-sep>", "<sep>", "<ent-remove-0>", "<ent-remove-1>", "<ent-remove-2>", "<ent-remove-3>", "<ent-remove-4>", "<ent-remove-5>", "<ent-remove-6>", "<ent-remove-7>", "<ent-remove-8>", "<ent-remove-9>", "<ent-remove-10>", "<ent-add-0>", "<ent-add-1>", "<ent-add-2>", "<ent-add-3>", "<ent-add-4>", "<ent-add-5>", "<ent-add-6>", "<ent-add-7>", "<ent-add-8>", "<ent-add-9>", "<ent-add-10>", "<span-remove-0>", "<span-remove-1>", "<span-remove-2>", "<span-remove-3>", "<span-remove-4>", "<span-remove-5>", "<span-remove-6>", "<span-remove-7>", "<span-remove-8>", "<span-remove-9>", "<span-remove-10>", "<shuffle-0>", "<shuffle-1>", "<shuffle-2>", "<shuffle-3>", "<shuffle-4>", "<shuffle-5>", "<shuffle-6>", "<shuffle-7>", "<shuffle-8>", "<shuffle-9>", "<shuffle-10>", "<procedure>", "</procedure>", "<dx>", "</dx>", "<test>", "</test>", "<treatment>", "</treatment>", "<med>", "</med>"]}

tokenizer_config.json

@@ -0,0 +1 @@
+{"unk_token": "<unk>", "bos_token": "<s>", "eos_token": "</s>", "add_prefix_space": false, "errors": "replace", "sep_token": "</s>", "cls_token": "<s>", "pad_token": "<pad>", "mask_token": "<mask>", "model_max_length": 1024, "special_tokens_map_file": null, "name_or_path": "facebook/bart-base", "tokenizer_class": "BartTokenizer"}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5c462c0f9afa32d322e8ad6608039a0afa468e9f6fa017ca4efa3177bce0b81c
+size 2735