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README.md
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---
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license: apache-2.0
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---
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license: apache-2.0
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tags:
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- biology
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- dna
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---
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# Dataset Card for Arabidopsis Genome Corpus
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***
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### Dataset Description
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This dataset consists of model plant genomes available on NCBI, specifically processed and cleaned for research and pre-training purposes.
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The default configuration, "6kbp," provides DNA chunks of 6.2kbp with a 100bp overlap on each side.
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The sequences are cleaned and processed to contain only the letters A, T, C, G, and N, ensuring high-quality genomic data suitable for various bioinformatics and machine learning applications.
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### Dataset Summary
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- Homepage: NCBI
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- License: NCBI Policies
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- Version: 1.1.0
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- Size: Variable depending on the configuration
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- Default Configuration: 6kbp chunks
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### Usage Example
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```
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from datasets import load_dataset
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chunk_length = 1024
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repo = "suke-sho/arabidopsis_genome_corpus"
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datasets = load_dataset(repo, trust_remote_code=True, chunk_length=chunk_length)
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```
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### Acknowledgments
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This dataset is an adaptation of the "InstaDeepAI/plant-multi-species-genomes" dataset & script.
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Special thanks to InstaDeepAI for their original work.
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