| [{"stream_name":"stdout","time":137.152015578,"data":" sequence_id sequence \\\n"} | |
| ,{"stream_name":"stdout","time":137.152105189,"data":"0 8cdfeef009ea GGGAACGACUCGAGUAGAGUCGAAAAACGUUGAUAUGGAUUUACUC... \n"} | |
| ,{"stream_name":"stdout","time":137.152115998,"data":"1 51e61fbde94d GGGAACGACUCGAGUAGAGUCGAAAAACAUUGAUAUGGAUUUACUC... \n"} | |
| ,{"stream_name":"stdout","time":137.152122799,"data":"2 25ce8d5109cd GGGAACGACUCGAGUAGAGUCGAAAAACCUUGAUAUGGAUUUACUC... \n"} | |
| ,{"stream_name":"stdout","time":137.152130287,"data":"3 07dcfb6d1965 GGGAACGACUCGAGUAGAGUCGAAAAACUUUGAUAUGGAUUUACUC... \n"} | |
| ,{"stream_name":"stdout","time":137.152136753,"data":"4 e561cc042a4c GGGAACGACUCGAGUAGAGUCGAAAAACGAUGAUAUGGAUUUACUC... \n"} | |
| ,{"stream_name":"stdout","time":137.152143308,"data":"... ... ... \n"} | |
| ,{"stream_name":"stdout","time":137.15214908,"data":"1643675 7951fb2f47f1 GGGAACGACUCGAGUAGAGUCGAAAAGGAGCGUCGUGUCUCUUGUA... \n"} | |
| ,{"stream_name":"stdout","time":137.152154956,"data":"1643676 e0dc5823e5e1 GGGAACGACUCGAGUAGAGUCGAAAAGGAGCGUCGUGUCUCUUGUA... \n"} | |
| ,{"stream_name":"stdout","time":137.152161009,"data":"1643677 0d6036529b42 GGGAACGACUCGAGUAGAGUCGAAAAGGAGCGUCGUGUCUCUUGUA... \n"} | |
| ,{"stream_name":"stdout","time":137.152165938,"data":"1643678 46d1f07d723b GGGAACGACUCGAGUAGAGUCGAAAAGGAGCGUCGUGUCUCUUGUA... \n"} | |
| ,{"stream_name":"stdout","time":137.152170142,"data":"1643679 60db72cc009f GGGAACGACUCGAGUAGAGUCGAAAAGGAGCGUCGUGUCUCUUGUA... \n"} | |
| ,{"stream_name":"stdout","time":137.152174296,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.152178193,"data":" experiment_type dataset_name reads signal_to_noise SN_filter \\\n"} | |
| ,{"stream_name":"stdout","time":137.152182288,"data":"0 2A3_MaP 15k_2A3 2343 0.944 0 \n"} | |
| ,{"stream_name":"stdout","time":137.152186381,"data":"1 2A3_MaP 15k_2A3 5326 1.933 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152190464,"data":"2 2A3_MaP 15k_2A3 4647 2.347 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152194478,"data":"3 2A3_MaP 15k_2A3 102843 11.824 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152198507,"data":"4 2A3_MaP 15k_2A3 7665 3.519 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152202477,"data":"... ... ... ... ... ... \n"} | |
| ,{"stream_name":"stdout","time":137.152207607,"data":"1643675 DMS_MaP SL5_M2seq_DMS 37530 7.248 1 \n"} | |
| ,{"stream_name":"stdout","time":137.15221326099999,"data":"1643676 DMS_MaP SL5_M2seq_DMS 337248 17.902 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152219707,"data":"1643677 DMS_MaP SL5_M2seq_DMS 44053 6.700 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152226577,"data":"1643678 DMS_MaP SL5_M2seq_DMS 108600 11.716 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152233863,"data":"1643679 DMS_MaP SL5_M2seq_DMS 107394 10.888 1 \n"} | |
| ,{"stream_name":"stdout","time":137.152240076,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.152246147,"data":" reactivity_0001 reactivity_0002 reactivity_0003 ... \\\n"} | |
| ,{"stream_name":"stdout","time":137.152253158,"data":"0 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152262062,"data":"1 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152268003,"data":"2 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152292812,"data":"3 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152297457,"data":"4 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152301622,"data":"... ... ... ... ... \n"} | |
| ,{"stream_name":"stdout","time":137.15230573,"data":"1643675 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152309672,"data":"1643676 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152313636,"data":"1643677 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152321785,"data":"1643678 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152327833,"data":"1643679 NaN NaN NaN ... \n"} | |
| ,{"stream_name":"stdout","time":137.152334018,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.152340607,"data":" reactivity_error_0197 reactivity_error_0198 reactivity_error_0199 \\\n"} | |
| ,{"stream_name":"stdout","time":137.152347808,"data":"0 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152487081,"data":"1 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152498971,"data":"2 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152506393,"data":"3 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152512484,"data":"4 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152519181,"data":"... ... ... ... \n"} | |
| ,{"stream_name":"stdout","time":137.152525951,"data":"1643675 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152532877,"data":"1643676 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.15253984,"data":"1643677 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152547028,"data":"1643678 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152553877,"data":"1643679 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152561111,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.15256753,"data":" reactivity_error_0200 reactivity_error_0201 reactivity_error_0202 \\\n"} | |
| ,{"stream_name":"stdout","time":137.152574392,"data":"0 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152581925,"data":"1 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.15258841,"data":"2 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152595422,"data":"3 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152602864,"data":"4 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152611676,"data":"... ... ... ... \n"} | |
| ,{"stream_name":"stdout","time":137.152647656,"data":"1643675 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152655666,"data":"1643676 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152662293,"data":"1643677 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.15266915,"data":"1643678 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152676184,"data":"1643679 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152691348,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.152698084,"data":" reactivity_error_0203 reactivity_error_0204 reactivity_error_0205 \\\n"} | |
| ,{"stream_name":"stdout","time":137.152705021,"data":"0 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152712384,"data":"1 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152719529,"data":"2 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152726436,"data":"3 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152733313,"data":"4 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152740432,"data":"... ... ... ... \n"} | |
| ,{"stream_name":"stdout","time":137.152747977,"data":"1643675 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152755199,"data":"1643676 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.15276232,"data":"1643677 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152769314,"data":"1643678 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152776865,"data":"1643679 NaN NaN NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152783722,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.152790154,"data":" reactivity_error_0206 \n"} | |
| ,{"stream_name":"stdout","time":137.152797236,"data":"0 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152804062,"data":"1 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152811792,"data":"2 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152817974,"data":"3 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152823391,"data":"4 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152829779,"data":"... ... \n"} | |
| ,{"stream_name":"stdout","time":137.152838239,"data":"1643675 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152844945,"data":"1643676 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152851907,"data":"1643677 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152857728,"data":"1643678 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152863765,"data":"1643679 NaN \n"} | |
| ,{"stream_name":"stdout","time":137.152869444,"data":"\n"} | |
| ,{"stream_name":"stdout","time":137.152890408,"data":"[1643680 rows x 419 columns]\n"} | |
| ,{"stream_name":"stdout","time":5543.243801125,"data":"DatasetDict({\n"} | |
| ,{"stream_name":"stdout","time":5543.243913908,"data":" atrain: Dataset({\n"} | |
| ,{"stream_name":"stdout","time":5543.243924047,"data":" features: ['sequence', 'experiment_type', 'labels'],\n"} | |
| ,{"stream_name":"stdout","time":5543.243930665,"data":" num_rows: 813621\n"} | |
| ,{"stream_name":"stdout","time":5543.243936977,"data":" })\n"} | |
| ,{"stream_name":"stdout","time":5543.243960404,"data":" avalid: Dataset({\n"} | |
| ,{"stream_name":"stdout","time":5543.24397036,"data":" features: ['sequence', 'experiment_type', 'labels'],\n"} | |
| ,{"stream_name":"stdout","time":5543.243976055,"data":" num_rows: 813621\n"} | |
| ,{"stream_name":"stdout","time":5543.243981631,"data":" })\n"} | |
| ,{"stream_name":"stdout","time":5543.243987442,"data":" btrain: Dataset({\n"} | |
| ,{"stream_name":"stdout","time":5543.243993516,"data":" features: ['sequence', 'experiment_type', 'labels'],\n"} | |
| ,{"stream_name":"stdout","time":5543.243999174,"data":" num_rows: 8219\n"} | |
| ,{"stream_name":"stdout","time":5543.244004728,"data":" })\n"} | |
| ,{"stream_name":"stdout","time":5543.244010253,"data":" bvalid: Dataset({\n"} | |
| ,{"stream_name":"stdout","time":5543.244016174,"data":" features: ['sequence', 'experiment_type', 'labels'],\n"} | |
| ,{"stream_name":"stdout","time":5543.244021853,"data":" num_rows: 8219\n"} | |
| ,{"stream_name":"stdout","time":5543.244027552,"data":" })\n"} | |
| ,{"stream_name":"stdout","time":5543.244032974,"data":"})\n"} | |
| ,{"stream_name":"stdout","time":5543.244051145,"data":"{'sequence': 'GGGAACGACUCGAGUAGAGUCGAAAACCAUAGCGAUAGGGAGAGAUGCUAGGAGUUAGAGGAGACCGAAGCGAGGAGGAAAGCAAAGAAAGCAACGGGGCUAGCCGUCAGGUGUUCCACCCCCCGACAACGGCUUCCAGUUCGCUGGAAGCCGUUGAAAAGAAACAACAACAACAAC', 'experiment_type': '2A3_MaP', 'labels': [-100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, 0.0, 0.0, 0.0, -2.2330000400543213, 0.0, -2.2330000400543213, 0.0, 6.698999881744385, 0.0, 0.0, 0.0, 0.0, 0.0, 2.2330000400543213, 0.0, 0.0, 0.0, 0.0, 0.0, 2.2330000400543213, 4.466000080108643, -2.2330000400543213, 0.0, 0.0, 0.0, 0.0, 2.2330000400543213, 0.0, -2.2330000400543213, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.2330000400543213, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 1.4889999628067017, 1.4889999628067017, 1.4889999628067017, -2.2330000400543213, 0.0, 0.0, 0.0, -2.2330000400543213, 2.2330000400543213, 0.0, 0.0, 2.2330000400543213, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.2330000400543213, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0]}\n"} | |
| ,{"stream_name":"stderr","time":5557.060614949,"data":"/opt/conda/lib/python3.10/site-packages/traitlets/traitlets.py:2930: FutureWarning: --Exporter.preprocessors=[\"remove_papermill_header.RemovePapermillHeader\"] for containers is deprecated in traitlets 5.0. You can pass `--Exporter.preprocessors item` ... multiple times to add items to a list.\n"} | |
| ,{"stream_name":"stderr","time":5557.060746364,"data":" warn(\n"} | |
| ,{"stream_name":"stderr","time":5557.067324028,"data":"[NbConvertApp] WARNING | Config option `kernel_spec_manager_class` not recognized by `NbConvertApp`.\n"} | |
| ,{"stream_name":"stderr","time":5557.1071318,"data":"[NbConvertApp] Converting notebook __notebook__.ipynb to notebook\n"} | |
| ,{"stream_name":"stderr","time":5557.626531339,"data":"[NbConvertApp] Writing 60351 bytes to __notebook__.ipynb\n"} | |
| ,{"stream_name":"stderr","time":5559.419852916,"data":"/opt/conda/lib/python3.10/site-packages/traitlets/traitlets.py:2930: FutureWarning: --Exporter.preprocessors=[\"nbconvert.preprocessors.ExtractOutputPreprocessor\"] for containers is deprecated in traitlets 5.0. You can pass `--Exporter.preprocessors item` ... multiple times to add items to a list.\n"} | |
| ,{"stream_name":"stderr","time":5559.41990177,"data":" warn(\n"} | |
| ,{"stream_name":"stderr","time":5559.42332107,"data":"[NbConvertApp] WARNING | Config option `kernel_spec_manager_class` not recognized by `NbConvertApp`.\n"} | |
| ,{"stream_name":"stderr","time":5559.489870232,"data":"[NbConvertApp] Converting notebook __notebook__.ipynb to html\n"} | |
| ,{"stream_name":"stderr","time":5560.542906554,"data":"[NbConvertApp] Writing 330028 bytes to __results__.html\n"} | |
| ] |