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- ---
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- license: mit
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- ---
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- # Description
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- Metal Ion Binding prediction is a binary classification task where each input protein *x* is mapped to a label *y* ∈ {0, 1}, corresponding to whether there are metal ion–binding sites in the protein.
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- The digital label means:
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- 0: No
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- 1: Yes
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-
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- # Splits
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- **Structure type:** PDB
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-
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- The dataset is from [**Exploring evolution-aware & -free protein language models as protein function predictors**](https://arxiv.org/abs/2206.06583). We employ all proteins from the original dataset, and split them based on 70% structure similarity (see [ProteinShake](https://github.com/BorgwardtLab/proteinshake/tree/main)), with the number of training, validation and test set shown below:
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- - Train: 5797
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- - Valid: 719
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- - Test: 719
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-
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- # Data format
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-
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- We organize all data in LMDB format. The architecture of the databse is like:
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- **length:** The number of samples
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- **0:**
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- - **name:** The PDB ID of the protein
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- - **chain:** The chain ID of the protein
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- - **seq:** The structure-aware sequence
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- - **label:** Digital label of the sequence
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-
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- **1:**
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- **···**
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+ ---
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+ license: mit
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+ ---
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+ # Description
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+ Metal Ion Binding prediction is a binary classification task where each input protein *x* is mapped to a label *y* ∈ {0, 1}, corresponding to whether there are metal ion–binding sites in the protein.
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+
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+
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+
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+ # Splits
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+
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+ **Structure type:** PDB
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+
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+ The dataset is from [**Exploring evolution-aware & -free protein language models as protein function predictors**](https://arxiv.org/abs/2206.06583). We employ all proteins from the original dataset, and split them based on 70% structure similarity (see [ProteinShake](https://github.com/BorgwardtLab/proteinshake/tree/main)), with the number of training, validation and test set shown below:
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+
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+ - Train: 5797
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+ - Valid: 719
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+ - Test: 719
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+
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+ # Label
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+
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+ 0: No
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+
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+ 1: Yes
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+