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ctheodoris
/
Geneformer
like
190
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
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c48e37c
Geneformer
/
examples
13 contributors
History:
29 commits
ctheodoris
Update minor formatting
c48e37c
about 1 year ago
pretraining_new_model
Update links including unsorted example lengths file
about 1 year ago
cell_classification.ipynb
96.1 kB
Add note to recommend tuning hyperparameters for downstream applications
about 1 year ago
extract_and_plot_cell_embeddings.ipynb
1.13 MB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
about 1 year ago
gene_classification.ipynb
168 kB
Add note to recommend tuning hyperparameters for downstream applications
about 1 year ago
hyperparam_optimiz_for_disease_classifier.py
7.84 kB
Update minor formatting
about 1 year ago
in_silico_perturbation.ipynb
3.65 kB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
about 1 year ago
tokenizing_scRNAseq_data.ipynb
3.25 kB
Add instructions to convert gene annotations w/ Ensembl Biomart
about 1 year ago