ctheodoris
/

Geneformer

Inference Endpoints

Model card Files Files and versions Community

Geneformer / examples

15 contributors

History: 23 commits

Christina Theodoris

Change list of individual IDs to set to ensure unique before subsetting into train/valid/test sets

45b9d69 over 1 year ago

pretraining_new_model
Update links including unsorted example lengths file over 1 year ago
cell_classification.ipynb

96.1 kB

Add note to recommend tuning hyperparameters for downstream applications over 1 year ago
gene_classification.ipynb

168 kB

Add note to recommend tuning hyperparameters for downstream applications over 1 year ago
hyperparam_optimiz_for_disease_classifier.py

6.78 kB

Change list of individual IDs to set to ensure unique before subsetting into train/valid/test sets over 1 year ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. over 1 year ago
tokenizing_scRNAseq_data.ipynb

3.25 kB

Add instructions to convert gene annotations w/ Ensembl Biomart over 1 year ago