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Geneformer

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Geneformer / examples

14 contributors

History: 11 commits

Christina Theodoris

Add example for tokenizing .loom dataset

f89f796 over 1 year ago

example_input_files
Add example input labels for distinguishing bivalent promoters. over 1 year ago
cell_classification.ipynb

95.8 kB

Subclass collator for cell classification over 1 year ago
gene_classification.ipynb

167 kB

Update gene classification example to create directory after training arguments are defined over 1 year ago
hyperparam_optimiz_for_disease_classifier.py

6.77 kB

Add example for hyperparameter optimization for disease classifier over 1 year ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. over 1 year ago
pretrain_geneformer_w_deepspeed.py

4.97 kB

Update pretrainer for transformers==4.28.0 over 1 year ago
tokenizing_scRNAseq_data.ipynb

1.34 kB

Add example for tokenizing .loom dataset over 1 year ago