ctheodoris commited on
Commit
57bc17e
1 Parent(s): fce3f6e

move dict loading to function in eval utils

Browse files
docs/source/geneformer.mtl_classifier.rst CHANGED
@@ -1,5 +1,5 @@
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  geneformer.mtl\_classifier
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- =========================
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  .. automodule:: geneformer.mtl_classifier
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  :members:
 
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  geneformer.mtl\_classifier
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+ ==========================
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  .. automodule:: geneformer.mtl_classifier
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  :members:
geneformer/evaluation_utils.py CHANGED
@@ -25,15 +25,15 @@ from .emb_extractor import make_colorbar
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  logger = logging.getLogger(__name__)
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- # load token dictionary (Ensembl IDs:token)
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- with open(TOKEN_DICTIONARY_FILE, "rb") as f:
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- gene_token_dict = pickle.load(f)
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-
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  def preprocess_classifier_batch(cell_batch, max_len, label_name):
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  if max_len is None:
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  max_len = max([len(i) for i in cell_batch["input_ids"]])
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  def pad_label_example(example):
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  example[label_name] = np.pad(
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  example[label_name],
 
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  logger = logging.getLogger(__name__)
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  def preprocess_classifier_batch(cell_batch, max_len, label_name):
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  if max_len is None:
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  max_len = max([len(i) for i in cell_batch["input_ids"]])
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+ # load token dictionary (Ensembl IDs:token)
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+ with open(TOKEN_DICTIONARY_FILE, "rb") as f:
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+ gene_token_dict = pickle.load(f)
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+
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  def pad_label_example(example):
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  example[label_name] = np.pad(
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  example[label_name],