ctheodoris davidjwen commited on
Commit
044d737
1 Parent(s): 1987df4

Fix bug with metadata when processing multiple .loom files (#3)

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- Fix bug with metadata when processing multiple .loom files (36a4b0619fa47023cfdd4f842c0850c5a4b7305b)


Co-authored-by: David Wen <[email protected]>

Files changed (1) hide show
  1. geneformer/tokenizer.py +2 -1
geneformer/tokenizer.py CHANGED
@@ -108,7 +108,8 @@ class TranscriptomeTokenizer:
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  loom_file_path
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  )
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  tokenized_cells += file_tokenized_cells
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- cell_metadata.update(file_cell_metadata)
 
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  return tokenized_cells, cell_metadata
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  loom_file_path
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  )
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  tokenized_cells += file_tokenized_cells
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+ for k in cell_metadata.keys():
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+ cell_metadata[k] += file_cell_metadata[k]
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  return tokenized_cells, cell_metadata
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