Push model using huggingface_hub.
Browse files- README.md +9 -0
- config.json +477 -0
- model.safetensors +3 -0
README.md
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---
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tags:
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- pytorch_model_hub_mixin
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- model_hub_mixin
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---
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This model has been pushed to the Hub using ****:
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- Repo: [More Information Needed]
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- Docs: [More Information Needed]
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config.json
ADDED
@@ -0,0 +1,477 @@
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{
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"model": {
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"hf_path": "anforsm/3DEM_TACC_LSD_AFF",
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"hyperparameters": {
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"downsample_factors": [
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[
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1,
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2,
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2
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],
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[
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],
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[
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]
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],
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"fmap_inc_factor": 5,
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"in_channels": 1,
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"kernel_size_down": [
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[
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[
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],
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[
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[
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],
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[
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],
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[
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[
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],
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[
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]
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61 |
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[
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62 |
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[
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63 |
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1,
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64 |
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65 |
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3
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],
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[
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3,
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3
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]
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]
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],
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"kernel_size_up": [
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[
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[
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[
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],
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"output_shapes": [
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]
|
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},
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"name": "3D Model With LSD",
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"path": "out"
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},
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"pipeline": {
|
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"_order": [
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"source",
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"normalize",
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"augment",
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"lsd_target",
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"target"
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],
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"_outputs": [
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"RAW",
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"LABELS",
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"GT_AFFS",
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"AFFS_WEIGHTS",
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"GT_LSDS",
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"LSDS_WEIGHTS",
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"GT_AFFS_MASK",
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"LABELS_MASK"
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],
|
138 |
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"augment": [
|
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{
|
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"elastic_augment": {
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"control_point_spacing": [
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1,
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|
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],
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"jitter_sigma": [
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0,
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],
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"rotation_interval": [
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0,
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],
|
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"scale_interval": [
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|
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],
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"subsample": 4
|
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}
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},
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{
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"simple_augment": {
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|
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]
|
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}
|
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},
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{
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"noise_augment": {
|
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"array": "RAW"
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}
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},
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{
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"intensity_augment": {
|
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"array": "RAW",
|
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"scale_max": 1.1,
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"scale_min": 0.9,
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"shift_max": 0.1,
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"shift_min": -0.1
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}
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},
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{
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"smooth_array": {
|
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"array": "RAW"
|
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}
|
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},
|
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{
|
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"grow_boundary": {
|
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"labels": "LABELS",
|
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"only_xy": true
|
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}
|
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}
|
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],
|
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"lsd_target": [
|
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{
|
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"add_local_shape_descriptor": {
|
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"descriptor": "GT_LSDS",
|
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"downsample": 2,
|
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"labels_mask": "LABELS_MASK",
|
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"lsds_mask": "LSDS_WEIGHTS",
|
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"segmentation": "LABELS",
|
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"sigma": 40
|
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}
|
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}
|
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],
|
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"normalize": [
|
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{
|
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"normalize": {
|
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"array": "RAW"
|
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}
|
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}
|
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],
|
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"source": [
|
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[
|
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[
|
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{
|
219 |
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"zarr_source": {
|
220 |
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"array_specs": {
|
221 |
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"_labels": {
|
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"array_spec": {
|
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"interpolatable": false
|
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}
|
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},
|
226 |
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"_labels_mask": {
|
227 |
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"array_spec": {
|
228 |
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"interpolatable": false
|
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}
|
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},
|
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"_raw": {
|
232 |
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"array_spec": {
|
233 |
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"interpolatable": true
|
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}
|
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}
|
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},
|
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"datasets": {
|
238 |
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"_labels": "labels/s0",
|
239 |
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"_labels_mask": "labels_mask/s0",
|
240 |
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"_raw": "raw/s0"
|
241 |
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},
|
242 |
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"store": "SynapseWeb/kh2015/oblique"
|
243 |
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}
|
244 |
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},
|
245 |
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{
|
246 |
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"pad": {
|
247 |
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"key": "RAW",
|
248 |
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"size": null
|
249 |
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}
|
250 |
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},
|
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{
|
252 |
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"pad": {
|
253 |
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"key": "LABELS",
|
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"size": {
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"coordinate": {
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{
|
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"pad": {
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267 |
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"key": "LABELS_MASK",
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"size": {
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"coordinate": {
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}
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},
|
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{
|
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"random_location": {
|
281 |
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"mask": "LABELS_MASK",
|
282 |
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"min_masked": 0.1
|
283 |
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}
|
284 |
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}
|
285 |
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],
|
286 |
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[
|
287 |
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{
|
288 |
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"zarr_source": {
|
289 |
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"array_specs": {
|
290 |
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"_labels": {
|
291 |
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"array_spec": {
|
292 |
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"interpolatable": false
|
293 |
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}
|
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},
|
295 |
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"_labels_mask": {
|
296 |
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"array_spec": {
|
297 |
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"interpolatable": false
|
298 |
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}
|
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},
|
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"_raw": {
|
301 |
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"array_spec": {
|
302 |
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"interpolatable": true
|
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}
|
304 |
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}
|
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},
|
306 |
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"datasets": {
|
307 |
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"_labels": "labels/s0",
|
308 |
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"_labels_mask": "labels_mask/s0",
|
309 |
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"_raw": "raw/s0"
|
310 |
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},
|
311 |
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"store": "SynapseWeb/kh2015/spine"
|
312 |
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}
|
313 |
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},
|
314 |
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{
|
315 |
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"pad": {
|
316 |
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"key": "RAW",
|
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"size": null
|
318 |
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}
|
319 |
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},
|
320 |
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{
|
321 |
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"pad": {
|
322 |
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"key": "LABELS",
|
323 |
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"size": {
|
324 |
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"coordinate": {
|
325 |
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"_positional": [
|
326 |
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|
327 |
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|
328 |
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]
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330 |
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331 |
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|
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|
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|
343 |
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|
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348 |
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|
350 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
386 |
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|
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|
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|
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|
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|
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|
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|
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|
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{
|
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|
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|
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|
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|
420 |
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|
421 |
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{
|
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|
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|
425 |
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|
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|
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|
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|
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|
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|
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|
433 |
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|
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|
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|
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|
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|
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|
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|
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|
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"_inputs": [
|
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|
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|
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|
445 |
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|
446 |
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|
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|
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|
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"weighted_m_s_e_loss_double": {}
|
450 |
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|
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|
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|
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|
454 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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"precache_per_worker": 4
|
475 |
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|
476 |
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|
477 |
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}
|
model.safetensors
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
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2 |
+
oid sha256:f60e6dd2f9be6795b4c284a4a2a3813bfb0ab3048710935565a5f7d321ecc01f
|
3 |
+
size 180239916
|