Update README.md

README.md

@@ -1,3 +1,132 @@
 ---
 license: mit
+pipeline_tag: sentence-similarity
+tags:
+- sentence-transformers
+- feature-extraction
+- sentence-similarity
+- transformers
 ---
+
+# S-PubMedBert-MedQuAD
+
+This is a [sentence-transformers](https://www.SBERT.net) model: It maps sentences & paragraphs to a 768 dimensional dense vector space and can be used for tasks like clustering or semantic search.
+
+<!--- Describe your model here -->
+
+## Usage (Sentence-Transformers)
+
+Using this model becomes easy when you have [sentence-transformers](https://www.SBERT.net) installed:
+
+```
+pip install -U sentence-transformers
+```
+
+Then you can use the model like this:
+
+```python
+from sentence_transformers import SentenceTransformer
+sentences = ["This is an example sentence", "Each sentence is converted"]
+
+model = SentenceTransformer('S-PubMedBert-MedQuAD')
+embeddings = model.encode(sentences)
+print(embeddings)
+```
+
+
+
+## Usage (HuggingFace Transformers)
+Without [sentence-transformers](https://www.SBERT.net), you can use the model like this: First, you pass your input through the transformer model, then you have to apply the right pooling-operation on-top of the contextualized word embeddings.
+
+```python
+from transformers import AutoTokenizer, AutoModel
+import torch
+
+
+#Mean Pooling - Take attention mask into account for correct averaging
+def mean_pooling(model_output, attention_mask):
+    token_embeddings = model_output[0] #First element of model_output contains all token embeddings
+    input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float()
+    return torch.sum(token_embeddings * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1), min=1e-9)
+
+
+# Sentences we want sentence embeddings for
+sentences = ['This is an example sentence', 'Each sentence is converted']
+
+# Load model from HuggingFace Hub
+tokenizer = AutoTokenizer.from_pretrained('S-PubMedBert-MedQuAD')
+model = AutoModel.from_pretrained('S-PubMedBert-MedQuAD')
+
+# Tokenize sentences
+encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')
+
+# Compute token embeddings
+with torch.no_grad():
+    model_output = model(**encoded_input)
+
+# Perform pooling. In this case, max pooling.
+sentence_embeddings = mean_pooling(model_output, encoded_input['attention_mask'])
+
+print("Sentence embeddings:")
+print(sentence_embeddings)
+```
+
+
+
+## Evaluation Results
+
+<!--- Describe how your model was evaluated -->
+
+For an automated evaluation of this model, see the *Sentence Embeddings Benchmark*: [https://seb.sbert.net](https://seb.sbert.net?model_name={MODEL_NAME})
+
+
+## Training
+The model was trained with the parameters:
+
+**DataLoader**:
+
+`torch.utils.data.DataLoader` of length 82590 with parameters:
+```
+{'batch_size': 2, 'shuffle':True}
+```
+
+**Loss**:
+
+`sentence_transformers.losses.SoftmaxLoss` with parameters:
+  ```
+  {'num_labels': 2, 'sentence_embedding_dimension': '768'}
+  ```
+
+Parameters of the fit()-Method:
+```
+{
+    "callback": null,
+    "epochs": 1,
+    "evaluation_steps": 0,
+    "evaluator": None,
+    "max_grad_norm": 1,
+    "optimizer_class": "<class 'transformers.optimization.AdamW'>",
+    "optimizer_params": {
+        "correct_bias": false,
+        "eps": 1e-06,
+        "lr": 2e-05
+    },
+    "scheduler": "WarmupLinear",
+    "steps_per_epoch": null,
+    "warmup_steps": 8259,
+    "weight_decay": 0.01
+}
+```
+
+
+## Full Model Architecture
+```
+SentenceTransformer(
+  (0): Transformer({'max_seq_length': 350, 'do_lower_case': False}) with Transformer model: BertModel 
+  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
+)
+```
+
+## Citing & Authors
+
+<!--- Describe where people can find more information -->