Commit
•
647c5bf
1
Parent(s):
3836b7a
Upload HyenaDNAForCausalLM
Browse files- config.json +35 -0
- configuration_hyena.py +88 -0
- model.safetensors +3 -0
- modeling_hyena.py +569 -0
config.json
ADDED
@@ -0,0 +1,35 @@
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{
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"_name_or_path": "hyenadna-small-32k-seqlen-hf",
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"activation_freq": 10,
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"architectures": [
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"HyenaDNAForCausalLM"
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],
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"auto_map": {
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"AutoConfig": "configuration_hyena.HyenaConfig",
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"AutoModel": "modeling_hyena.HyenaDNAModel",
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"AutoModelForCausalLM": "modeling_hyena.HyenaDNAForCausalLM",
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"AutoModelForSequenceClassification": "modeling_hyena.HyenaDNAForSequenceClassification"
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},
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"d_inner": 1024,
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"d_model": 256,
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"emb_dim": 5,
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"embed_dropout": 0.1,
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"filter_order": 64,
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"hyena_dropout": 0.0,
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"hyena_filter_dropout": 0.0,
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"hyena_order": 2,
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"initializer_range": 0.02,
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"layer_norm_epsilon": 1e-05,
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"max_seq_len": 32770,
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"model_type": "hyenadna",
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"n_layer": 4,
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"num_inner_mlps": 2,
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"pad_vocab_size_multiple": 8,
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"short_filter_order": 3,
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"tie_word_embeddings": false,
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"torch_dtype": "float32",
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"train_freq": true,
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"transformers_version": "4.35.0.dev0",
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"use_bias": true,
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"vocab_size": 12
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}
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configuration_hyena.py
ADDED
@@ -0,0 +1,88 @@
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from transformers import PretrainedConfig
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import json
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class HyenaConfig(PretrainedConfig):
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model_type = "hyenadna"
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def __init__(
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self,
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vocab_size=12,
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d_model=256,
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d_inner=None,
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use_bias=True,
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train_freq=True,
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max_seq_len=1024,
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emb_dim=3,
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n_layer=12,
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num_inner_mlps=2,
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hyena_order=2,
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short_filter_order=3,
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filter_order=64,
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activation_freq=1,
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embed_dropout=0.1,
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hyena_dropout=0.0,
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hyena_filter_dropout=0.0,
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layer_norm_epsilon=1e-5,
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initializer_range=0.02,
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pad_vocab_size_multiple=8,
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**kwargs,
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):
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self.vocab_size = vocab_size
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self.d_model = d_model
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if d_inner is None:
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self.d_inner = 4 * d_model
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else:
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self.d_inner = d_inner
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self.use_bias = use_bias
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self.train_freq = train_freq
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self.max_seq_len = max_seq_len
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self.emb_dim = emb_dim
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self.n_layer = n_layer
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self.hyena_order = hyena_order
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self.filter_order = filter_order
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self.short_filter_order = short_filter_order
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self.activation_freq = activation_freq
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self.num_inner_mlps = num_inner_mlps
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self.embed_dropout = embed_dropout
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self.hyena_dropout = hyena_dropout
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self.hyena_filter_dropout = hyena_filter_dropout
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self.layer_norm_epsilon = layer_norm_epsilon
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self.initializer_range = initializer_range
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self.pad_vocab_size_multiple = pad_vocab_size_multiple
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super().__init__(**kwargs)
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@classmethod
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def from_original_config(cls, config_path, **kwargs):
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with open(config_path, "r") as f:
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config = json.load(f)
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vocab_size = config["vocab_size"]
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d_model = config["d_model"]
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d_inner = config["d_inner"]
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max_seq_len = config["layer"]["l_max"]
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emb_dim = config["layer"]["emb_dim"]
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filter_order = config["layer"]["filter_order"]
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if "local_order" in config["layer"]:
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short_filter_order = config["layer"]["local_order"]
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elif "short_filter_order" in config["layer"]:
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short_filter_order = config["layer"]["short_filter_order"]
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else:
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short_filter_order = 3
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n_layer = config["n_layer"]
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activation_freq = config["layer"]["w"]
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embed_dropout = config["embed_dropout"]
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pad_vocab_size_multiple = config["pad_vocab_size_multiple"]
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return cls(vocab_size=vocab_size,
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d_model=d_model,
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d_inner=d_inner,
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max_seq_len=max_seq_len,
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emb_dim=emb_dim,
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filter_order=filter_order,
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short_filter_order=short_filter_order,
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n_layer=n_layer,
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activation_freq=activation_freq,
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embed_dropout=embed_dropout,
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pad_vocab_size_multiple=pad_vocab_size_multiple,
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tie_word_embeddings=False,
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**kwargs
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)
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:b7a1c9479248edf27691b189bb6657256f1705e560cadc64d6431633932cafa1
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size 16289216
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modeling_hyena.py
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1 |
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# -*- coding: utf-8 -*-
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2 |
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"""HyenaDNA custom code port to Hugging Face Hub"""
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3 |
+
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4 |
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import math
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5 |
+
import torch
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6 |
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import torch.nn as nn
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7 |
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from torch.nn import functional as F
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8 |
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from .configuration_hyena import HyenaConfig
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9 |
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from transformers import PreTrainedModel
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10 |
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from typing import Optional, Tuple, Union
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11 |
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from transformers.modeling_outputs import CausalLMOutput, SequenceClassifierOutput, BaseModelOutputWithNoAttention
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12 |
+
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13 |
+
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14 |
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def fftconv(u, k, D):
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"""
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16 |
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We apply a convolution through the fourier domain (from the Convolution Theorem)
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17 |
+
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18 |
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"""
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19 |
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seqlen = u.shape[-1]
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20 |
+
fft_size = 2 * seqlen
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21 |
+
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22 |
+
k_f = torch.fft.rfft(k, n=fft_size) / fft_size
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23 |
+
u_f = torch.fft.rfft(u.to(dtype=k.dtype), n=fft_size)
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24 |
+
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25 |
+
if len(u.shape) > 3: k_f = k_f.unsqueeze(1)
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26 |
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y = torch.fft.irfft(u_f * k_f, n=fft_size, norm='forward')[..., :seqlen]
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27 |
+
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28 |
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out = y + u * D.unsqueeze(-1)
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29 |
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return out.to(dtype=u.dtype)
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30 |
+
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31 |
+
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32 |
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@torch.jit.script
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33 |
+
def mul_sum(q, y):
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34 |
+
return (q * y).sum(dim=1)
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35 |
+
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36 |
+
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37 |
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class HyenaSin(nn.Module):
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38 |
+
"""The Sin activation function for the Hyena Filter function."""
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39 |
+
def __init__(self, config):
|
40 |
+
super().__init__()
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41 |
+
self.freq = nn.Parameter(config.activation_freq * torch.ones(1, config.filter_order)) if config.train_freq else config.activation_freq * torch.ones(1, config.filter_order)
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42 |
+
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43 |
+
def forward(self, x):
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44 |
+
return torch.sin(self.freq * x)
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45 |
+
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46 |
+
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47 |
+
class HyenaPositionalEmbedding(nn.Module):
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48 |
+
def __init__(self, config):
|
49 |
+
"""Complex exponential positional embeddings for Hyena filters."""
|
50 |
+
super().__init__()
|
51 |
+
|
52 |
+
self.seq_len = config.max_seq_len
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53 |
+
# The time embedding fed to the filteres is normalized so that t_f = 1
|
54 |
+
t = torch.linspace(0, 1, self.seq_len)[None, :, None] # 1, L, 1
|
55 |
+
|
56 |
+
if config.emb_dim > 1:
|
57 |
+
bands = (config.emb_dim - 1) // 2
|
58 |
+
# To compute the right embeddings we use the "proper" linspace
|
59 |
+
t_rescaled = torch.linspace(0, self.seq_len - 1, self.seq_len)[None, :, None]
|
60 |
+
w = 2 * math.pi * t_rescaled / self.seq_len # 1, L, 1
|
61 |
+
|
62 |
+
f = torch.linspace(1e-4, bands - 1, bands)[None, None]
|
63 |
+
# Matt: This is just Euler's formula, so if complex64 is a problem it can be replaced
|
64 |
+
# by separate sin() and cos() calls.
|
65 |
+
z = torch.exp(-1j * f * w)
|
66 |
+
z = torch.cat([t, z.real, z.imag], dim=-1)
|
67 |
+
# TODO Set z's LR to lr_pos_emb
|
68 |
+
self.z = nn.Parameter(z, requires_grad=True)
|
69 |
+
self.register_buffer("t", t)
|
70 |
+
|
71 |
+
def forward(self, L):
|
72 |
+
return self.z[:, :L], self.t[:, :L]
|
73 |
+
|
74 |
+
|
75 |
+
class HyenaExponentialModulation(nn.Module):
|
76 |
+
"""The window function applied to the output of the (MLP) filter function."""
|
77 |
+
def __init__(
|
78 |
+
self,
|
79 |
+
d_model,
|
80 |
+
fast_decay_pct=0.3,
|
81 |
+
slow_decay_pct=1.5,
|
82 |
+
target=1e-2,
|
83 |
+
modulate: bool=True,
|
84 |
+
shift: float = 0.05,
|
85 |
+
**kwargs
|
86 |
+
):
|
87 |
+
super().__init__()
|
88 |
+
self.modulate = modulate
|
89 |
+
self.shift = shift
|
90 |
+
max_decay = math.log(target) / fast_decay_pct
|
91 |
+
min_decay = math.log(target) / slow_decay_pct
|
92 |
+
deltas = torch.linspace(min_decay, max_decay, d_model)[None, None]
|
93 |
+
self.register_buffer("deltas", deltas)
|
94 |
+
|
95 |
+
def forward(self, t, x):
|
96 |
+
if self.modulate:
|
97 |
+
decay = torch.exp(-t * self.deltas.abs())
|
98 |
+
x = x * (decay + self.shift)
|
99 |
+
return x
|
100 |
+
|
101 |
+
|
102 |
+
class HyenaFilter(nn.Module):
|
103 |
+
def __init__(
|
104 |
+
self,
|
105 |
+
config,
|
106 |
+
**kwargs
|
107 |
+
):
|
108 |
+
"""
|
109 |
+
Implicit long filter with modulation.
|
110 |
+
|
111 |
+
Args:
|
112 |
+
d_model: number of channels in the input
|
113 |
+
emb_dim: dimension of the positional encoding (`emb_dim` - 1) // 2 is the number of bands
|
114 |
+
order: width of the FFN
|
115 |
+
num_inner_mlps: number of inner linear layers inside filter MLP
|
116 |
+
|
117 |
+
Note:
|
118 |
+
filter_dropout is not implemented
|
119 |
+
"""
|
120 |
+
super().__init__()
|
121 |
+
|
122 |
+
self.d_model = config.d_model * (config.hyena_order - 1)
|
123 |
+
self.use_bias = config.use_bias
|
124 |
+
self.bias = nn.Parameter(torch.randn(self.d_model))
|
125 |
+
self.dropout = nn.Dropout(config.hyena_filter_dropout)
|
126 |
+
|
127 |
+
act = HyenaSin(config)
|
128 |
+
self.emb_dim = config.emb_dim
|
129 |
+
assert self.emb_dim % 2 != 0 and self.emb_dim >= 3, "emb_dim must be odd and greater or equal to 3 (time, sine and cosine)"
|
130 |
+
self.seq_len = config.max_seq_len
|
131 |
+
|
132 |
+
self.pos_emb = HyenaPositionalEmbedding(config)
|
133 |
+
|
134 |
+
self.implicit_filter = nn.Sequential(
|
135 |
+
nn.Linear(self.emb_dim, config.filter_order),
|
136 |
+
act,
|
137 |
+
)
|
138 |
+
for i in range(config.num_inner_mlps):
|
139 |
+
self.implicit_filter.append(nn.Linear(config.filter_order, config.filter_order))
|
140 |
+
self.implicit_filter.append(act)
|
141 |
+
|
142 |
+
self.implicit_filter.append(nn.Linear(config.filter_order, config.d_model, bias=False))
|
143 |
+
|
144 |
+
self.modulation = HyenaExponentialModulation(config.d_model)
|
145 |
+
|
146 |
+
self.normalized = False
|
147 |
+
|
148 |
+
def filter(self, L, *args, **kwargs):
|
149 |
+
z, t = self.pos_emb(L)
|
150 |
+
h = self.implicit_filter(z)
|
151 |
+
h = self.modulation(t, h)
|
152 |
+
return h
|
153 |
+
|
154 |
+
def forward(self, x, L, k=None, bias=None, *args, **kwargs):
|
155 |
+
if k is None: k = self.filter(L)
|
156 |
+
|
157 |
+
# Ensure compatibility with filters that return a tuple
|
158 |
+
k = k[0] if type(k) is tuple else k
|
159 |
+
|
160 |
+
y = fftconv(x, k, bias)
|
161 |
+
return y
|
162 |
+
|
163 |
+
|
164 |
+
class HyenaOperator(nn.Module):
|
165 |
+
def __init__(
|
166 |
+
self,
|
167 |
+
config,
|
168 |
+
**filter_args,
|
169 |
+
):
|
170 |
+
r"""
|
171 |
+
Hyena operator described in the paper https://arxiv.org/pdf/2302.10866.pdf
|
172 |
+
|
173 |
+
Args:
|
174 |
+
d_model (int): Dimension of the input and output embeddings (width of the layer)
|
175 |
+
l_max: (int): Maximum input sequence length. Defaults to None
|
176 |
+
order: (int): Depth of the Hyena recurrence. Defaults to 2
|
177 |
+
dropout: (float): Dropout probability. Defaults to 0.0
|
178 |
+
filter_dropout: (float): Dropout probability for the filter. Defaults to 0.0
|
179 |
+
"""
|
180 |
+
super().__init__()
|
181 |
+
|
182 |
+
self.d_model = config.d_model
|
183 |
+
self.l_max = config.max_seq_len
|
184 |
+
self.order = config.hyena_order
|
185 |
+
inner_width = config.d_model * (self.order + 1)
|
186 |
+
self.dropout = nn.Dropout(config.hyena_dropout)
|
187 |
+
self.in_proj = nn.Linear(self.d_model, inner_width)
|
188 |
+
self.out_proj = nn.Linear(self.d_model, self.d_model)
|
189 |
+
|
190 |
+
self.short_filter = nn.Conv1d(
|
191 |
+
inner_width,
|
192 |
+
inner_width,
|
193 |
+
config.short_filter_order,
|
194 |
+
padding=2,
|
195 |
+
groups=inner_width
|
196 |
+
)
|
197 |
+
self.filter_fn = HyenaFilter(config)
|
198 |
+
|
199 |
+
def forward(self, u):
|
200 |
+
l = u.size(-2)
|
201 |
+
l_filter = min(l, self.l_max)
|
202 |
+
u = self.in_proj(u).transpose(1, 2)
|
203 |
+
|
204 |
+
uc = self.short_filter(u)[...,:l_filter]
|
205 |
+
*x, v = uc.split(self.d_model, dim=1)
|
206 |
+
|
207 |
+
k = self.filter_fn.filter(l_filter)[0]
|
208 |
+
k = k.transpose(0, 1).reshape(self.order - 1, self.d_model, l_filter)
|
209 |
+
bias = self.filter_fn.bias.reshape(self.order - 1, self.d_model)
|
210 |
+
|
211 |
+
for o, x_i in enumerate(reversed(x[1:])):
|
212 |
+
v = self.dropout(v * x_i)
|
213 |
+
v = self.filter_fn(v, l_filter, k=k[o], bias=bias[o])
|
214 |
+
|
215 |
+
y = (v * x[0]).transpose(1, 2)
|
216 |
+
|
217 |
+
y = self.out_proj(y)
|
218 |
+
return y
|
219 |
+
|
220 |
+
class HyenaMlp(nn.Module):
|
221 |
+
|
222 |
+
def __init__(self, config):
|
223 |
+
"""
|
224 |
+
From https://github.com/HazyResearch/flash-attention/blob/main/flash_attn/modules/mlp.py
|
225 |
+
"""
|
226 |
+
super().__init__()
|
227 |
+
in_features = config.d_model
|
228 |
+
hidden_features = config.d_inner
|
229 |
+
self.fc1 = nn.Linear(in_features, hidden_features)
|
230 |
+
self.fc2 = nn.Linear(hidden_features, config.d_model)
|
231 |
+
|
232 |
+
def forward(self, x):
|
233 |
+
y = self.fc1(x)
|
234 |
+
y = F.gelu(y, approximate="tanh")
|
235 |
+
y = self.fc2(y)
|
236 |
+
return y
|
237 |
+
|
238 |
+
class HyenaBlock(nn.Module):
|
239 |
+
|
240 |
+
def __init__(self, config):
|
241 |
+
"""
|
242 |
+
From https://github.com/HazyResearch/flash-attention/blob/main/flash_attn/modules/block.py
|
243 |
+
For prenorm=True, this Block has a slightly different structure compared to a regular
|
244 |
+
prenorm Transformer block.
|
245 |
+
The standard block is: LN -> MHA -> Dropout -> Add -> LN -> MLP -> Dropout -> Add.
|
246 |
+
[Ref: https://arxiv.org/abs/2002.04745]
|
247 |
+
Here we have: Dropout -> Add -> LN -> MHA -> Dropout -> Add -> LN -> MLP, returning both
|
248 |
+
the hidden_states (output of the MLP) and the residual.
|
249 |
+
This is for performance reasons, as we can fuse the dropout, add and LayerNorm.
|
250 |
+
The residual needs to be provided (except for the very first block).
|
251 |
+
For prenorm=False, this Block has the same structure as a regular postnorm Transformer
|
252 |
+
block: MHA -> Dropout -> Add -> LN -> MLP -> Dropout -> Add -> LN.
|
253 |
+
return_residual: whether each of the sub-layers (mixer and mlp) will return the residual.
|
254 |
+
This is for performance reason: for post-norm architecture, returning the input allows us
|
255 |
+
to fuse the backward of nn.Linear with the residual connection.
|
256 |
+
"""
|
257 |
+
super().__init__()
|
258 |
+
self.mixer = HyenaOperator(config)
|
259 |
+
self.norm1 = nn.LayerNorm(config.d_model)
|
260 |
+
self.mlp = HyenaMlp(config)
|
261 |
+
self.norm2 = nn.LayerNorm(config.d_model)
|
262 |
+
|
263 |
+
def forward(self, hidden_states):
|
264 |
+
r"""Pass the input through the encoder layer.
|
265 |
+
Args:
|
266 |
+
hidden_states: the sequence to the encoder layer (required).
|
267 |
+
residual: if postnorm, residual=None, If prenorm, hidden_states = Attn/MLP(LN(residual))
|
268 |
+
mixer_subset: for cross-attention only. If not None, will take a subset of x
|
269 |
+
before applying the query projection. Useful for e.g., ViT where we only care
|
270 |
+
about the CLS token in the last layer.
|
271 |
+
"""
|
272 |
+
residual = hidden_states
|
273 |
+
residual = residual.to(torch.float32)
|
274 |
+
hyena_normed = self.norm1(residual.to(dtype=self.norm1.weight.dtype))
|
275 |
+
hidden_states = self.mixer(hyena_normed)
|
276 |
+
# Tested above here and all is equivalent. That means the mixer is fine!!!
|
277 |
+
residual = hidden_states + residual
|
278 |
+
hidden_states = self.norm2(residual.to(dtype=self.norm2.weight.dtype))
|
279 |
+
residual = residual.to(torch.float32)
|
280 |
+
|
281 |
+
hidden_states = self.mlp(hidden_states)
|
282 |
+
return hidden_states + residual
|
283 |
+
|
284 |
+
|
285 |
+
# https://github.com/huggingface/transformers/blob/c28d04e9e252a1a099944e325685f14d242ecdcd/src/transformers/models/gpt2/modeling_gpt2.py#L454
|
286 |
+
|
287 |
+
|
288 |
+
class HyenaEmbeddings(nn.Module):
|
289 |
+
|
290 |
+
def __init__(self, config, padding_idx=None):
|
291 |
+
"""
|
292 |
+
If max_position_embeddings <= 0, there's no position embeddings
|
293 |
+
If word_embe_proj_dim is not None (e.g., OPT-350m), we embed to that dimension
|
294 |
+
the project up to embed_dim
|
295 |
+
"""
|
296 |
+
super().__init__()
|
297 |
+
vocab_size = config.vocab_size
|
298 |
+
if vocab_size % config.pad_vocab_size_multiple != 0:
|
299 |
+
vocab_size += config.pad_vocab_size_multiple - (vocab_size % config.pad_vocab_size_multiple)
|
300 |
+
self.word_embeddings = nn.Embedding(vocab_size, config.d_model, padding_idx=padding_idx)
|
301 |
+
|
302 |
+
def forward(self, input_ids):
|
303 |
+
"""
|
304 |
+
input_ids: (batch, seqlen)
|
305 |
+
"""
|
306 |
+
embeddings = self.word_embeddings(input_ids)
|
307 |
+
return embeddings
|
308 |
+
|
309 |
+
class HyenaLMBackbone(nn.Module):
|
310 |
+
|
311 |
+
def __init__(self, config) -> None:
|
312 |
+
super().__init__()
|
313 |
+
# note max_position_embeddings is 0 for Hyena, and therefore isn't used
|
314 |
+
self.embeddings = HyenaEmbeddings(config)
|
315 |
+
self.dropout = nn.Dropout(config.embed_dropout)
|
316 |
+
|
317 |
+
self.layers = nn.ModuleList([HyenaBlock(config) for i in range(config.n_layer)])
|
318 |
+
|
319 |
+
self.ln_f = nn.LayerNorm(config.d_model, eps=config.layer_norm_epsilon)
|
320 |
+
self.gradient_checkpointing = False
|
321 |
+
|
322 |
+
def forward(self, input_ids, inputs_embeds=None, output_hidden_states=False):
|
323 |
+
all_hidden_states = []
|
324 |
+
if inputs_embeds is not None:
|
325 |
+
hidden_states = inputs_embeds
|
326 |
+
else:
|
327 |
+
hidden_states = self.embeddings(input_ids)
|
328 |
+
if output_hidden_states:
|
329 |
+
all_hidden_states.append(hidden_states)
|
330 |
+
|
331 |
+
for layer in self.layers:
|
332 |
+
if self.gradient_checkpointing and self.training:
|
333 |
+
hidden_states = self._gradient_checkpointing_func(layer.__call__, hidden_states)
|
334 |
+
else:
|
335 |
+
hidden_states = layer(hidden_states)
|
336 |
+
if output_hidden_states:
|
337 |
+
all_hidden_states.append(hidden_states)
|
338 |
+
|
339 |
+
hidden_states = self.ln_f(hidden_states.to(dtype=self.ln_f.weight.dtype))
|
340 |
+
if output_hidden_states:
|
341 |
+
all_hidden_states.append(hidden_states)
|
342 |
+
|
343 |
+
return hidden_states, all_hidden_states
|
344 |
+
|
345 |
+
|
346 |
+
class HyenaDNAPreTrainedModel(PreTrainedModel):
|
347 |
+
config_class = HyenaConfig
|
348 |
+
base_model_prefix = "hyena"
|
349 |
+
supports_gradient_checkpointing = True
|
350 |
+
_no_split_modules = ["HyenaBlock"]
|
351 |
+
_skip_keys_device_placement = "past_key_values"
|
352 |
+
|
353 |
+
def _init_weights(self, initializer_range=0.02):
|
354 |
+
# Reinitialize selected weights subject to the OpenAI GPT-2 Paper Scheme:
|
355 |
+
# > A modified initialization which accounts for the accumulation on the residual path with model depth. Scale
|
356 |
+
# > the weights of residual layers at initialization by a factor of 1/√N where N is the # of residual layers.
|
357 |
+
# > -- GPT-2 :: https://openai.com/blog/better-language-models/
|
358 |
+
#
|
359 |
+
# Reference (Megatron-LM): https://github.com/NVIDIA/Megatron-LM/blob/main/megatron/model/gpt_model.py
|
360 |
+
for name, p in self.named_parameters():
|
361 |
+
if name in ["out_proj.weight", "fc2.weight"]:
|
362 |
+
# Special Scaled Initialization --> There are 2 Layer Norms per Transformer Block
|
363 |
+
nn.init.normal_(p, mean=0.0, std=initializer_range / math.sqrt(2 * self.config.num_layers))
|
364 |
+
# If using GLU activation for now, we scale the std by 2
|
365 |
+
elif name in ["output_linear.0.weight"]:
|
366 |
+
# Special Scaled Initialization --> There are 2 Layer Norms per Transformer Block
|
367 |
+
nn.init.normal_(p, mean=0.0, std=initializer_range / math.sqrt(2 * self.config.num_layers))
|
368 |
+
|
369 |
+
|
370 |
+
class HyenaDNAModel(HyenaDNAPreTrainedModel):
|
371 |
+
def __init__(self, config) -> None:
|
372 |
+
super().__init__(config)
|
373 |
+
|
374 |
+
self.backbone = HyenaLMBackbone(config)
|
375 |
+
self.config = config
|
376 |
+
|
377 |
+
# Initialize weights and apply final processing
|
378 |
+
self.post_init()
|
379 |
+
|
380 |
+
def forward(self, input_ids, inputs_embeds=None, output_hidden_states=None, return_dict=None):
|
381 |
+
output_hidden_states = (
|
382 |
+
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
|
383 |
+
)
|
384 |
+
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
|
385 |
+
|
386 |
+
hidden_states, all_hidden_states = self.backbone(input_ids, inputs_embeds=inputs_embeds, output_hidden_states=output_hidden_states)
|
387 |
+
if return_dict:
|
388 |
+
return BaseModelOutputWithNoAttention(last_hidden_state=hidden_states,
|
389 |
+
hidden_states=all_hidden_states if output_hidden_states else None)
|
390 |
+
elif output_hidden_states:
|
391 |
+
return hidden_states, all_hidden_states
|
392 |
+
else:
|
393 |
+
return hidden_states
|
394 |
+
|
395 |
+
|
396 |
+
class HyenaDNAForCausalLM(HyenaDNAPreTrainedModel):
|
397 |
+
|
398 |
+
def __init__(self, config):
|
399 |
+
super().__init__(config)
|
400 |
+
self.hyena = HyenaDNAModel(config)
|
401 |
+
vocab_size = config.vocab_size
|
402 |
+
if vocab_size % config.pad_vocab_size_multiple != 0:
|
403 |
+
vocab_size += config.pad_vocab_size_multiple - (vocab_size % config.pad_vocab_size_multiple)
|
404 |
+
self.vocab_size = vocab_size
|
405 |
+
self.lm_head = nn.Linear(config.d_model, vocab_size, bias=False)
|
406 |
+
|
407 |
+
# Initialize weights and apply final processing
|
408 |
+
self.post_init()
|
409 |
+
|
410 |
+
def get_input_embeddings(self):
|
411 |
+
return self.hyena.backbone.embeddings.word_embeddings
|
412 |
+
|
413 |
+
def set_input_embeddings(self, value):
|
414 |
+
self.hyena.backbone.embeddings.word_embeddings = value
|
415 |
+
|
416 |
+
def get_output_embeddings(self):
|
417 |
+
return self.lm_head
|
418 |
+
|
419 |
+
def set_output_embeddings(self, new_embeddings):
|
420 |
+
self.lm_head = new_embeddings
|
421 |
+
|
422 |
+
def set_decoder(self, decoder):
|
423 |
+
self.hyena = decoder
|
424 |
+
|
425 |
+
def get_decoder(self):
|
426 |
+
return self.hyena
|
427 |
+
|
428 |
+
def forward(
|
429 |
+
self,
|
430 |
+
input_ids: torch.LongTensor = None,
|
431 |
+
inputs_embeds: Optional[torch.FloatTensor] = None,
|
432 |
+
labels: Optional[torch.LongTensor] = None,
|
433 |
+
output_hidden_states: Optional[bool] = None,
|
434 |
+
return_dict: Optional[bool] = None,
|
435 |
+
) -> Union[Tuple, CausalLMOutput]:
|
436 |
+
|
437 |
+
output_hidden_states = (
|
438 |
+
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
|
439 |
+
)
|
440 |
+
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
|
441 |
+
|
442 |
+
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
|
443 |
+
outputs = self.hyena(
|
444 |
+
input_ids=input_ids,
|
445 |
+
inputs_embeds=inputs_embeds,
|
446 |
+
output_hidden_states=output_hidden_states,
|
447 |
+
return_dict=return_dict,
|
448 |
+
)
|
449 |
+
|
450 |
+
hidden_states = outputs[0]
|
451 |
+
logits = self.lm_head(hidden_states)
|
452 |
+
logits = logits.float()
|
453 |
+
|
454 |
+
loss = None
|
455 |
+
if labels is not None:
|
456 |
+
# Shift so that tokens < n predict n
|
457 |
+
shift_logits = logits[..., :-1, :].contiguous()
|
458 |
+
shift_labels = labels[..., 1:].contiguous()
|
459 |
+
# Flatten the tokens
|
460 |
+
loss_fct = nn.CrossEntropyLoss()
|
461 |
+
shift_logits = shift_logits.view(-1, self.config.vocab_size)
|
462 |
+
shift_labels = shift_labels.view(-1)
|
463 |
+
# Enable model parallelism
|
464 |
+
shift_labels = shift_labels.to(shift_logits.device)
|
465 |
+
loss = loss_fct(shift_logits, shift_labels)
|
466 |
+
|
467 |
+
if not return_dict:
|
468 |
+
output = (logits,) + outputs[1:]
|
469 |
+
return (loss,) + output if loss is not None else output
|
470 |
+
|
471 |
+
return CausalLMOutput(
|
472 |
+
loss=loss,
|
473 |
+
logits=logits,
|
474 |
+
hidden_states=outputs.hidden_states,
|
475 |
+
)
|
476 |
+
|
477 |
+
|
478 |
+
class HyenaDNAForSequenceClassification(HyenaDNAPreTrainedModel):
|
479 |
+
def __init__(self, config):
|
480 |
+
super().__init__(config)
|
481 |
+
self.num_labels = config.num_labels
|
482 |
+
self.hyena = HyenaDNAModel(config)
|
483 |
+
self.score = nn.Linear(config.d_model, self.num_labels, bias=False)
|
484 |
+
|
485 |
+
# Initialize weights and apply final processing
|
486 |
+
self.post_init()
|
487 |
+
|
488 |
+
def get_input_embeddings(self):
|
489 |
+
return self.hyena.backbone.embeddings.word_embeddings
|
490 |
+
|
491 |
+
def set_input_embeddings(self, value):
|
492 |
+
self.hyena.backbone.embeddings.word_embeddings = value
|
493 |
+
|
494 |
+
def forward(
|
495 |
+
self,
|
496 |
+
input_ids: torch.LongTensor = None,
|
497 |
+
inputs_embeds: Optional[torch.FloatTensor] = None,
|
498 |
+
labels: Optional[torch.LongTensor] = None,
|
499 |
+
output_hidden_states: Optional[bool] = None,
|
500 |
+
return_dict: Optional[bool] = None,
|
501 |
+
) -> Union[Tuple, SequenceClassifierOutput]:
|
502 |
+
r"""
|
503 |
+
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
|
504 |
+
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
|
505 |
+
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
|
506 |
+
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
|
507 |
+
"""
|
508 |
+
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
|
509 |
+
|
510 |
+
transformer_outputs = self.hyena(
|
511 |
+
input_ids,
|
512 |
+
inputs_embeds=inputs_embeds,
|
513 |
+
output_hidden_states=output_hidden_states,
|
514 |
+
return_dict=return_dict,
|
515 |
+
)
|
516 |
+
hidden_states = transformer_outputs[0]
|
517 |
+
logits = self.score(hidden_states)
|
518 |
+
|
519 |
+
if input_ids is not None:
|
520 |
+
batch_size = input_ids.shape[0]
|
521 |
+
else:
|
522 |
+
batch_size = inputs_embeds.shape[0]
|
523 |
+
|
524 |
+
if self.config.pad_token_id is None and batch_size != 1:
|
525 |
+
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
|
526 |
+
if self.config.pad_token_id is None:
|
527 |
+
sequence_lengths = -1
|
528 |
+
else:
|
529 |
+
if input_ids is not None:
|
530 |
+
sequence_lengths = (torch.eq(input_ids, self.config.pad_token_id).long().argmax(-1) - 1).to(
|
531 |
+
logits.device
|
532 |
+
)
|
533 |
+
else:
|
534 |
+
sequence_lengths = -1
|
535 |
+
|
536 |
+
pooled_logits = logits[torch.arange(batch_size, device=logits.device), sequence_lengths]
|
537 |
+
|
538 |
+
loss = None
|
539 |
+
if labels is not None:
|
540 |
+
labels = labels.to(logits.device)
|
541 |
+
if self.config.problem_type is None:
|
542 |
+
if self.num_labels == 1:
|
543 |
+
self.config.problem_type = "regression"
|
544 |
+
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
|
545 |
+
self.config.problem_type = "single_label_classification"
|
546 |
+
else:
|
547 |
+
self.config.problem_type = "multi_label_classification"
|
548 |
+
|
549 |
+
if self.config.problem_type == "regression":
|
550 |
+
loss_fct = nn.MSELoss()
|
551 |
+
if self.num_labels == 1:
|
552 |
+
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
|
553 |
+
else:
|
554 |
+
loss = loss_fct(pooled_logits, labels)
|
555 |
+
elif self.config.problem_type == "single_label_classification":
|
556 |
+
loss_fct = nn.CrossEntropyLoss()
|
557 |
+
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
|
558 |
+
elif self.config.problem_type == "multi_label_classification":
|
559 |
+
loss_fct = nn.BCEWithLogitsLoss()
|
560 |
+
loss = loss_fct(pooled_logits, labels)
|
561 |
+
if not return_dict:
|
562 |
+
output = (pooled_logits,) + transformer_outputs[1:]
|
563 |
+
return ((loss,) + output) if loss is not None else output
|
564 |
+
|
565 |
+
return SequenceClassifierOutput(
|
566 |
+
loss=loss,
|
567 |
+
logits=pooled_logits,
|
568 |
+
hidden_states=transformer_outputs.hidden_states,
|
569 |
+
)
|